RNA id: TCONS_00036974


Basic Information

Item Value
RNA id TCONS_00036974
length 353
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id XLOC_018379
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46042321 ~ 46042988 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACATAGTCACATAAGACACAGTTTTTGTGGCTAGCTGCAGCGAGCAGAGTGTTTTTTCTCATTGCTTGTGTTACACTCCACTGAGTCGGATCTAGCCATCGAACCAGTGGAGGTCTTGGACTTGTTACTTGTGTTGCACTCCACTGAGTCGGATCTAGCCATCGAACCAGTGGAGGTCTTGGACTTGTTACTTGTGTTGCACTCCACTGAGTCCGATCTAGCCATCGAACCAGTGGAGGTCTTGGACTTGTTACTTGTGTTGCGCGCCACGGAGTCGGATCTGGCCATCGAACCAGTGGAGGTCTTGGACTTGTTACTTGTGTTGCACTCCACTGAGTCGGATCTGGCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036973 lncRNA downstream 58661 45907147 ~ 45983660 (-) False XLOC_018378
TCONS_00036972 lncRNA downstream 58661 45907147 ~ 45983660 (-) False XLOC_018378
TCONS_00036971 lncRNA downstream 58682 45907147 ~ 45983639 (-) False XLOC_018378
TCONS_00036970 lncRNA downstream 58686 45907147 ~ 45983635 (-) False XLOC_018378
TCONS_00036161 lncRNA downstream 58881 45907764 ~ 45983440 (-) False XLOC_018378
TCONS_00036975 lncRNA upstream 102828 46145816 ~ 46146728 (-) True XLOC_018391
TCONS_00036976 lncRNA upstream 111252 46154240 ~ 46155152 (-) True XLOC_018392
TCONS_00036509 lncRNA upstream 114641 46157629 ~ 46159156 (-) False XLOC_018393
TCONS_00036977 lncRNA upstream 121405 46164393 ~ 46165422 (-) False XLOC_018394
TCONS_00036979 lncRNA upstream 693694 46736682 ~ 46739927 (-) False XLOC_018401
TCONS_00036159 mRNA downstream 230169 45801610 ~ 45812152 (-) True XLOC_018375
TCONS_00036156 mRNA downstream 230177 45775935 ~ 45812144 (-) False XLOC_018375
TCONS_00036157 mRNA downstream 234339 45776479 ~ 45807982 (-) False XLOC_018375
TCONS_00036155 mRNA downstream 270015 45754323 ~ 45772306 (-) True XLOC_018374
TCONS_00036154 mRNA downstream 319426 45706183 ~ 45722895 (-) True XLOC_018373
TCONS_00036163 mRNA upstream 2747 46045735 ~ 46046758 (-) True XLOC_018380
TCONS_00036164 mRNA upstream 9697 46052685 ~ 46053720 (-) True XLOC_018381
TCONS_00036165 mRNA upstream 17647 46060635 ~ 46061650 (-) True XLOC_018382
TCONS_00036166 mRNA upstream 25610 46068598 ~ 46069609 (-) True XLOC_018383
TCONS_00036167 mRNA upstream 30692 46073680 ~ 46074694 (-) True XLOC_018384
TCONS_00036148 other downstream 1129990 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036136 other downstream 1693264 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 2959254 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 2962840 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 3074933 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036178 other upstream 140199 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 407490 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 693694 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 840372 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036200 other upstream 1034991 47077979 ~ 47078093 (-) True XLOC_018409