RNA id: TCONS_00036164


Basic Information

Item Value
RNA id TCONS_00036164
length 1036
RNA type mRNA
GC content 0.43
exon number 1
gene id XLOC_018381
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46052685 ~ 46053720 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGATTTTAAATGACACTGATATTTACTCTGAGAATGTGCTTCTCTGTTATCCACTCCTGCCGGACTCCTGTCCCAGAACTCAGCGTCTCCCTGCACTTAAAGTGGCGATGTATGCTGTCATGGTGTTGATGATCCTCACCACAGTTTTTGGAAACCTGTTGGTCatcatctccatctctcacttcaaACAGCTTCAGTCTCCAACTCATCTGATCGTTCAGTCTCTTGCAGCTTGTGATTGTCTGCTGGGTTCTTTGGTCATGCCGTACAGCATGGTGCGATCTGTTGAAGGCTGCTGGTATCTGGGAACTGTTGTGTGTAAAGTTCATTCAAGTTTGGACATGACTTTCAGCATCTCCTCCATATTGCACCTCAGTTTAATAGCTATCGACAGGTTTTGGGCAATTTCTGATCCTTTAAGGTACAAAATGAGAGTCACAAACACCACTGTGGCTGGGTTTATCACATTCACATGGCTGTTTTCATTTGTGTACAGCTTTTCTGTCGTGTTTACTGGTGTAAACAATGTGGGTTTGGAGGAACTCATATTGCAGATTTCTTGTTTTGGTGGATGTGTTCTGTTCTTTAACAAAGAATGGGGATTAATTTGTGCACTTTTTGTATTTCTAATCCCAGGAACTATTATGAGCTCTCTGTACATGAGCATCTTCAATGTTGTGAAAAGGCATGCAAAAGTTATGTCTGAGAAAGTGTCCGCTGCTGCTACTGCAGGCAGTCATTTCCAAACCTCTTCACACAGAGAAAGAAAAGCAGCTAAAACTCTGGCCATTGTCATGGGGGTTTTCTATCTCTGCTGGCTGCCTTTTTTTACCGCCACCGCTGTTGATCCTTTCCTCAACTTCTCAACTCCCGGTGATGTTTTTGATGCTTTGGTTTGGTTCGGATACTTTAACTCCACCTGTAACCCACTGATCTATGGTTTCTTCTATCCTCGCTTTCAGAAGGCCTTCAAGATTCTCATATCCACTTACATCTGTGGCAGCAGCGACTCTCACACCTTGACATTTGAATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:1990080 2-phenylethylamine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-54 Enables 2-phenylethylamine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).

Ensembl:

ensembl_id ENSDART00000136254

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036974 lncRNA downstream 9697 46042321 ~ 46042988 (-) True XLOC_018379
TCONS_00036161 lncRNA downstream 69245 45907764 ~ 45983440 (-) False XLOC_018378
TCONS_00036975 lncRNA upstream 92096 46145816 ~ 46146728 (-) True XLOC_018391
TCONS_00036976 lncRNA upstream 100520 46154240 ~ 46155152 (-) True XLOC_018392
TCONS_00036509 lncRNA upstream 103909 46157629 ~ 46159156 (-) False XLOC_018393
TCONS_00036977 lncRNA upstream 110673 46164393 ~ 46165422 (-) False XLOC_018394
TCONS_00036979 lncRNA upstream 682962 46736682 ~ 46739927 (-) False XLOC_018401
TCONS_00036163 mRNA downstream 5927 46045735 ~ 46046758 (-) True XLOC_018380
TCONS_00036159 mRNA downstream 240533 45801610 ~ 45812152 (-) True XLOC_018375
TCONS_00036156 mRNA downstream 240541 45775935 ~ 45812144 (-) False XLOC_018375
TCONS_00036157 mRNA downstream 244703 45776479 ~ 45807982 (-) False XLOC_018375
TCONS_00036155 mRNA downstream 280379 45754323 ~ 45772306 (-) True XLOC_018374
TCONS_00036165 mRNA upstream 6915 46060635 ~ 46061650 (-) True XLOC_018382
TCONS_00036166 mRNA upstream 14878 46068598 ~ 46069609 (-) True XLOC_018383
TCONS_00036167 mRNA upstream 19960 46073680 ~ 46074694 (-) True XLOC_018384
TCONS_00036168 mRNA upstream 31088 46084808 ~ 46085840 (-) True XLOC_018385
TCONS_00036169 mRNA upstream 46914 46100634 ~ 46101648 (-) True XLOC_018386
TCONS_00036148 other downstream 1140354 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036136 other downstream 1703628 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 2969618 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 2973204 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 3085297 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036178 other upstream 129467 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 396758 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 682962 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 829640 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036200 other upstream 1024259 47077979 ~ 47078093 (-) True XLOC_018409

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_05189829_05190863.mRNA True 1296 mRNA 0.39 1 CI01000029 5189763 ~ 5191058 (-)