RNA id: TCONS_00036509


Basic Information

Item Value
RNA id TCONS_00036509
length 1456
lncRNA type sense_over
GC content 0.39
exon number 2
gene id XLOC_018393
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46157629 ~ 46159156 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTAAAGTCATGCTGATTATTATAAAATGGATTATATGttctctgtttatttgtttggatTTTTGTTCACTTGTGTGAAATAATATCTATTAGGAAAATAATGTAGGAGCAGTTTGTAAGTGTTGACAGTTAACCTTTTTGTTCATTGCAGAAGGTGGAATCAAAATAAATGGATGACCATATCAACATCAGCCAAACTGAGTCCTGGGAAAAGCCTCTTCTCTGTTATGAGTTTAGTAACAGGTCTTGTCAGAAGTTTGTTTATCCTTTGGATACTCGTATATTGCTATATATGCTTTTCAGCATCTCTTCAATAATCACAATCATAGGAaacctgctggtgatcataacgGTCGTTCATTTCAGGCAGCTTCACACGCCGACTAACTACCTCATCTTGTCTCTGGCTGTGGCCGATCTGCTTGTCGGAGGAGTTGTGATGCCTCCCAGCATGCTGCGCTCCATCGAGACCTGCTGGTATCTGGGAGATTTGTTCTACAGATATTACGCCATATGTCACCCGTTCCAATATCACAGTAAAATGACGTCGCTTGCCACATTGATTATGATTATCATCTGCTGGACTGTTTCGGCTGTTCTGGGCTTTGGCATGATCTTCATGGAGCTGAATATTCTCGGTGTTGAAGATTTTTACTATGAGAACATCAGATGTGATGGTGGCTGCTTTGTGTTTCAGAGTAAAACCGGAGGTACTGTGTTCTCACTGATCTGTTTTTATATTCCTGCATTTGTCATGCTCGGTGTGTATCTTAAAATCTTACATGAAGCTCAGCGGCAGGTTCAGGCCATCCAGAGTGTGAATTCTGAACTGAAGAAGGAGGGAAAAGCCACTAAGACTTTAGCCATCATCATGGGAGTCTTTCTGACATTCTGGATTCCCTTTTTCCTCTGTAATCTCATTGATCCATTAATCGGCTACTCTGTTCCTTCACTAGTCTTTGACTTGTTCCTGTGGGTTGGATATTATAATTCCACCTGTAATCCAATAGTGTACGCCTTCTTTTACAGCTGGTTCAGACATGCTTTCAGAGTCATTCTGTCCAAAAGAGTATTTCAGACTAATTCTTCAAGAACAATATTGATGTAATAATAAAGATGGTCATGTTTAAATACAGTTTTGTACTTCTTAACAGACCCTTTTCACTAAAAGAAGTGCAAATCTGTTATTTTAAACGCTTGTAAGTCTGGCCTACGTGATCTTAGTGCATATGAGTGCTGTCATTCAGGGCACTTGTGAGTCCACAAGTGTTGATCTTTTCCCCTCTCAAGGACACTTATGAATCACTAATAAACAAAAATGCTGTTACACATATTTCCgaatgactttttaaaatctttttatgtCACACTAAAAATTTATTCTAATACAAAACTAATATTGACATTCAAAATACTGTATGGTACTACCGGGTGTATATTTTTCATCCTTGCTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036976 lncRNA downstream 2477 46154240 ~ 46155152 (-) True XLOC_018392
TCONS_00036975 lncRNA downstream 10901 46145816 ~ 46146728 (-) True XLOC_018391
TCONS_00036974 lncRNA downstream 114641 46042321 ~ 46042988 (-) True XLOC_018379
TCONS_00036160 lncRNA downstream 174189 45907764 ~ 45983440 (-) False XLOC_018378
TCONS_00036977 lncRNA upstream 5237 46164393 ~ 46165422 (-) False XLOC_018394
TCONS_00036979 lncRNA upstream 577526 46736682 ~ 46739927 (-) False XLOC_018401
TCONS_00036978 lncRNA upstream 577526 46736682 ~ 46739927 (-) False XLOC_018401
TCONS_00036191 lncRNA upstream 579295 46738451 ~ 46739927 (-) True XLOC_018401
TCONS_00036510 lncRNA upstream 606898 46766054 ~ 46769624 (-) True XLOC_018402
TCONS_00036175 mRNA downstream 2476 46154142 ~ 46155153 (-) False XLOC_018392
TCONS_00036174 mRNA downstream 10900 46145718 ~ 46146729 (-) False XLOC_018391
TCONS_00036173 mRNA downstream 19519 46137100 ~ 46138110 (-) True XLOC_018390
TCONS_00036172 mRNA downstream 29039 46127591 ~ 46128590 (-) True XLOC_018389
TCONS_00036171 mRNA downstream 43162 46113445 ~ 46114467 (-) True XLOC_018388
TCONS_00036177 mRNA upstream 5182 46164338 ~ 46249185 (-) False XLOC_018394
TCONS_00036179 mRNA upstream 192450 46351606 ~ 46362606 (-) False XLOC_018395
TCONS_00036180 mRNA upstream 197872 46357028 ~ 46360077 (-) True XLOC_018395
TCONS_00036181 mRNA upstream 283126 46442282 ~ 46467280 (-) False XLOC_018396
TCONS_00036183 mRNA upstream 363922 46523078 ~ 46534179 (-) True XLOC_018397
TCONS_00036148 other downstream 1245298 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036136 other downstream 1808572 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 3074562 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 3078148 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 3190241 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036178 other upstream 24031 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 291322 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 577526 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 724204 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036200 other upstream 918823 47077979 ~ 47078093 (-) True XLOC_018409

Expression Profile

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