RNA id: TCONS_00003643


Basic Information

Item Value
RNA id TCONS_00003643
length 1696
RNA type mRNA
GC content 0.51
exon number 1
gene id XLOC_001826
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3145707 ~ 3155957 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGAAGTTGGAAATGGAATTGCCAAATCATGCCAAACAATTGCTGCTGCAGCTAAACCAACAAAGAGCCAAAGGTTATCTGTGTGATGTGATCATAGTTGTAGAAAATGCCCTTTTTCGAGCACACAAGAACATTCTTGCAGCCAGCAGTATCTACTTCAAGTCCCTTATCCTTCATGACAACTTGATTAACCTCGATACGGACATGGTCAACCCGTCGGTATTCCGGCAGGTTCTGGATTTCATTTACACTGGCAAGCTTTTGTCATCTGATCAGTTCAGTGACCACAATTTCAACGCTCTTCTAACAGCAGCAAGCTACCTCCAACTTCACGACTTGGCTGCTCTCTGCAGGAAGAAACTCAAGCGCAATGGGAGATCCCTCCTTAATAAACCAACCACCCCTACCAATGGAAGAACTTCTAGGAACCAAAGGCTGTCCTCTACACCTGTAACTCCAAACCAAATGTCAGGGTTAAAAGACAGTGAGAAGACAAAGAGGCACGAGGAGCTTATCAAAGATGACTTGTCAGAGGACGAGATGTTTGCGAGAAACACCCACTGTACAACTTCAAATTCGCTCAGTCCCTCTACGAGTAAGAACGGAAGCAACGGCAGTTGTGGCATGCAGGAACTTGGTTTAGACCTTTCCAAGAAAAGCCCCTCAGGGAGCACAGCCACTGAAGAAGTAAGTCCCAGCAGCATCCCACAAGAATCACCTCAGTCTGCCTCAGAATCCACAGCCAACAGTGCCTCATTTGATGAGAACCCCAACACGCAGAACCTCACCGCTGGAGAGCCCATGGAGCTGGGCGTAGGAGAATGTGAAGAGAGCCAACCACCTCCAGACGTCGACCAGCATAAAAGCTCCCGGCAGGTTACCCGGCAGAGGCGGCAGCCCAAGAGCGAAGGCAAAAAGGGTGAAGACATGGAACGAGTAACTTTACCAAACGGAGTCTCCAAAAGATTGAAAGTGGCTGGAGAGAGGCTCCCTGCTGGTGGGAACGGCAACTCCGAAGTATCCTTCCAGTGTAAAGATGAAGAGGAAGGCTTGGAGAATGGACAGGAGCAGAGTGAAGAGAGTGGACAGAGCGAGAACGAAGGTGGGCGGAATAGCGCCAATTACGTGTACCGCCAGGAAGGTTTTGAGCCCGCCCTTGGCGACAACCTTTACGTTTGCATCCCCTGTGGTAAAGGCTTCCCGAGCTCCGAGGAGCTGAATGCCCACGTGGAGACCCACACAGAGGAGGAGTTGTATATCAAAGAGGAGGATGATGATTCTTATCCAAAGGAAGATGAAGTAGAAGCGGAAGACTTGTCTTCACAAATAACCCAAGTCCATGGCACCGAGACGCGTCGCTTCAGCTGCTCGGTCTGCAACAAGAGCTACAAAGATCCGGCCACTCTTCGTCAACATGAGAAGACGCACTGGCTCACCCGTCCCTTCCCCTGTAACATCTGCGGCAAGATGTTCACCCAACGTGGCACCATGACACGCCACATGCGCAGCCACCTGGGGCTGAAGCCCTTTGCCTGCGAGGAATGCGGCATGCGCTTTACTCGCCAATACCGGCTCACAGAGCACATGCGGGTTCACTCAGGTGAGAAGCCGTACGAATGTCAGCTTTGTGGGGGCAAATTTACCCAGCAGCGTAACCTCATTAGCCACCTACGAATGCATACCTCCCCATCATAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030619-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human HIC2 (HIC ZBTB transcriptional repressor 2).

Ensembl:

ensembl_id ENSDART00000183223

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005670 lncRNA upstream 174469 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 649931 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 716065 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 749195 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003603 lncRNA upstream 1162505 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005810 lncRNA downstream 106910 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 144216 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 181187 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 701399 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 1134037 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00003640 mRNA upstream 24086 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003639 mRNA upstream 24086 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003638 mRNA upstream 24086 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003641 mRNA upstream 24086 3127809 ~ 3129887 (+) True XLOC_001825
TCONS_00003634 mRNA upstream 47211 3049636 ~ 3106762 (+) True XLOC_001824
TCONS_00003644 mRNA downstream 144161 3299829 ~ 3322338 (+) False XLOC_001828
TCONS_00003645 mRNA downstream 181104 3336772 ~ 3359189 (+) False XLOC_001829
TCONS_00003647 mRNA downstream 272526 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003648 mRNA downstream 274763 3430431 ~ 3455639 (+) True XLOC_001831
TCONS_00003649 mRNA downstream 352193 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003633 other upstream 127450 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 465292 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 886616 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1488935 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2348614 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003646 other downstream 253115 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1337609 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1830382 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1980174 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1995681 5151349 ~ 5152401 (+) True XLOC_001855

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018624 True 1551 mRNA 0.56 3 CM030135.1 15682455 ~ 15691741 (+)