RNA id: TCONS_00003644


Basic Information

Item Value
RNA id TCONS_00003644
length 5765
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_001828
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3299829 ~ 3322338 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACACTCCGCTGACACAAACGCGCATGCGCAGTTAGTCTCCTTCACTTTGTCCTGTTAGCAGTTAAGTGTCAAATCTGAAACACAGGACAGCAAAAACCTTCTGCTTTCTTTTCGCTTCATCGTTTTGTCTGCCTGCGCAACAGCGTCCTCGTCATAATGGCTGTTCCTCCTGCGTATTCAGACCTGGGAAAATCGGCCAAGGACATTTTCAGCAAGGGTTACGgtTTTGGCATTGTTAAACTGGACCTCAAGACTAAATCTCAAAATGGAGTGGAGTTTAACACATCTGGATCAACCAACACGGACACGGGAAAAGCCGCCGGGAGTTTGGAGACCAAGTATAAGCTGAAGGATCTGGGTTTGAGTTTCAACCAGAAGTGGAACACGGACAACATGCTCACGACTGAAGTCTCTGTGGAAGACCAGCTTGCAGAGGGGCTCAAAGTGGCCCTGGACACATCTTTTGTACCAAACACCGGCaagaagagcggtaaactgaagACCAGCTACAAGCGGGAGTTCGTCAACGTGAGCTGTGACCTTGATTTCGAGGGTCCGGTCGTTCATTCTGCAGCTGTGTTGGGATACGAAGGCTGGCTCTTGGGATACTTGGTGGCGTTTGACACAGCCAAGTCCAAACTGGTGCAAAACAACTTCGCTCTGGGATACAAGACTGGAGACTTCCAGCTTCACACTAATGTTAATGATGGTGCAGAGTTTGGTGGATCTGTGTATCAGAAGGTCAGCGATCAGCTGGAGACGGCCGTCACTTTAGCCTGGACCGCCGGCAGCAACAACACACGGTTCGGAGTTGCTGCGAAGTACCAGCTAGATAAAGATGCCTCGCTGTCTGCTAAAGTGAACAACGCGAGTCTGATTGGAATTGGTTACACTCAGAGTCTTCGACCAGGGGTGAAACTGACTCTCTCGGCTCTCGTTGATGGGAAAAACTTCAACACCGGCGGACACAAGGTTGGACTGGGGTTTGAGTTGGAAGCGTAAAAACCGAAGAAGCGTCCTCACTTCCTCTCTCACAGCCCTTCTGCACTACATCACACACTCTAGCACTCCACGACTCGAACACTTAGCAGCATGTTGACGGTTTTCGCAAGTCTGTGTGTGAATCGCCGAAAGATCTGGCCTTCTAAGGGAAATATTTGCCGGTCacctaatttatttaatgaagGCCGTATATTTACAGAGCACCTGCAGCAAACCAAAATACACAAGTAGCGGTAGATTAGCAAGCATTGGGGAATGTTTCTCTGGTGATGTCAGCGCATGCTAAGCACTTATGTTTCGCAGCGGAGGTCAGAAACTGCACGAGGGTAGCTGAGGTTATTTCTCAGGACGGTTGTTAGAGTGACGTTGCACTTCTTGGGTTTTAGGCTATTGAGAGCGCTCACAGGAAACCGAAGAGACAGCAGACGCGTGTGTATTTTTAGAGCTTGCAACACTTTCTTTTACATTCATTGATGGTTAGAGAGCAACTCTGTATTGTGGAGGAAATCGCAAGTAGAAACCCACTTCAAATGTGCTGCTGTGAGcaattgtatttataaaatacCAACTGCTTTgggtaaatattaatataattgtatACTGGCCATTTTCAAGGTGTTTCAATTCCCACAGCTGTATGTgtgctttatttatatatacacacacacacagttgaattattcgcccccctgtttatttttttctcctcaatttaatggagagcagatttttcaacacatttctaatcataatagttttaataactcatctctaataactgatttattttatctttgccatgatgacagtacataatattttaatgagaattaagacacttctatatagcttaaagtgacatttaaaggcttaattgggttaattaggataactaggcaggttagggtaatcggGTAAGGTaatatataatgatggtttgttttgttgactatcgagaaaaaaaatatagcttaaaggggctaataattttgaccttaaaatggtgtttaaaaaattaaaaactgcttttattctagccgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgtgaacatttccatgctctgttaaacatcatttgggaaatatttaaaaaaagaagaaaaatttaattttaaattaaaggggggttaaaaattctgacttcaactgtatatacactgcattcggaaagtattcatagcgttcacgttttccacatttgtttgttacaggcttattccaaaatggattaaattcatttatttcctcaacattctacacacaatcccccataatgacaatgtgaacaaagagtttttgaaatttttgcaaatttattaaaaataaaaaagctgaaaaatcacctgtacatcagtattcacagcctttggcgcgaagctctaaattgagctcaggtactgtacattcttccagcaggacaatgacccaaagcacaccatcAAAATATctatggcttcacaacaactctgtgaaatgttcttgagtggcccagtcagagcccaggcctaaatcctattgaacatctctgaagagagatctgaaaatggctgaacaCCATCAcctcccatccaacctgatagagcttgagaggtactgcaaagaggaatgggcaaaaattcccaaatacAGGTGTGCCAAAcatgtggcatcatattcaaaaagacttgaggctgtaattgctgccaaaggtgcatcaacaaagtattgagcaaaggctgagaATACTAATGTAGATGtggtttttcagcttttttatttttaataaatttgcaacaatttcaaaaactcttttcacattgtcattatgggggattgtgtgtagaatgttgaggaaataaatgaatttaatgcatgttggaataaggctgtgacataaacaaatgtggaaaaagtgaagcgctatcaatacttttcggatacacacacacacaaaaactgtataggtacaaaagctgtcactgaggtACATTTTAGGTCCTAATATGGAACTTTTAGGTACTagtatattcaccttattctcagcggTCTTTTTGGCTCGAGTCTTCCGGTCTCATTCaattctattcatttttagacgttaatatcagcttgttatgctgctagatgttgcaaactgatgttctcatattatattattctactttgtctgtatagtcatgcaaacacttgctTGTAAATGTTTTCTGCCTATTATTatccctagtcatttctcccataggcaactgaattggaagttcttaAACAATCAGAAAAAACATGTGCACGTCCACATTGAAGAGTAAGGTCTATAACTTTAAAGGAGATCTATTaggcccctttttacaagatgtaaaataagtccctAGAGGACGACCcaggagtgtgtatgtgaagtttcagctcaaaatacttcacaaaaatgttttaaagctcTTTGAAattgacccttttaggctttgatccaaattgtggcgttttggtgactgtcgctttaaattcaaatgagattgtgctcttttcaaaagagggtggagctatgaacgcctatgtgtcagcatagtggcagatttaaaactcTGATGGTGGATGGCTGCTtcacactcagggctgtttatgctaatgagggagagatggtcactaatgggcggggcttttccccttctgatgacatgtacaatggGGTAATGTCAATCAaattgtttctgcagactgttttatgaAGCGTGATTATAAAAAATCATAGAACGAATAAATGTGTATCATTAGAGGCTGGTtacattcacacactgctgccacacaactgtgtttaaaccccttataaaagtgatttttgcataatagctcccctttaaggTATCAACATGAATTCTTTAGGTACTAACATGTACCTAAGGGCATCACCCCAGTGACtgcttttgtaaatatatatatttctacatTCATACTACGGCGCTGtagaatgcttgattctgattggctgataaacatTCTAAGGTATCCCTGAACAGTCAAAGATCACATCAAAACAAGACTTGAGGCTTTGGATGAGATGCGTATGAAACTAGTCCCACACAGAGGAGCtttttgaggacaaaaacctgacaaatgtttAAAACACACCATCTGAACCCTGTCTTTAGTAGCAGTAACCGTAGTATAATAACACTGACTCAGTCTGGACTggtgaattattagaaaataatgcacacccagGGTGTAAAGGACACTCAGCTACACATCAGTACCTTAGGCATGCATAGgtttgtcacaatactggaattagATACCAATCGGTACTGGAATTTTAAAAACCACAAACATTTGAGCATCGCTGTTGAGCAtattcttaaacagtgctgatttgccattgtgctcgcatgctcaacagaaatggctgTCAAGGTCATCaattcaccgaactcaccgcacTTTActaagtgtaaccacagataaaaggacactggagcgttttaaagtcacgtcaatcagctggtttgtccagTCTCCCTGTATCCGTGGTTACACtcggtaaacagtggtgagttcagagaactgatgaccttcacggccaatcacatccatttctgttgagcatgtgaagaAAATGGCAAACCAGCACTGAacacgctcaaatgttagcgggaaataaacgtttttaaaatttcggTAGTGATTTGCATTGATTTCccgtatcgtgacaaccctaggcGTGCAttctttttataataatttaatggcCTGTGTATGTATAGTGAAGCCCGAAATTAtttatacccctggcaaattctgacttactttttaaggttttttttgaCCGGAAATGTCACAGGCTTCTTTCAGAAGATAATAAGATCAGGTACAAGAGGCATCagtgtgtaaaaaaaatatatatatatttctcagcttttatttacatttgaacaatattttttgatgatttgatgatgaaaatgtctgaattagagctgcacgattctggctaaaatgagaattgcgattttttttttttttgcttaaaataaagatcacaattctctcacgattctgtagatgtaaaataaaggtatggtaaaaacaaacatcgataataatattatgtgtgggtctactggtttttataaataattctattctacttataataattctgatgttgaattattatgtttgagatatgcttgcaatctgtcatattgaACAATTTTATTctctggtaaaatcagacatttaccattatcagattattttcaatatataggctagagtagttatactgacattgtaaacatttattttcatgcacaacatcattaactgaagacaaaaatgacatttttaggtgaattataccttataaatacagtatgtgactcattcaacatcatttggaggtgtcagtcAGCAACGCAtgtaaaacaatcaaaaaactcgtgcagccgccttttcttctctcctgaacttgaaaatatgattggcagaatcatagaaatgctggattaagatcgtctaggggttgaatcgagattgcgatcttttaacgattaattgtgcaggtCTAGTCTGAATTTTCCAGGGGTGTGAATAATTTCAGGTTTGACTgtgtaaatatacacacacacacacacacacacacacacacatagtcaaACTAATTTTAGAACTGAAGACCTTGGTCTCTGTACCCCATTTTCCAGTGGCAActgaaaaattctaataaaaagtGAAAACAGTCGT

Function

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-954 Predicted to enable voltage-gated anion channel activity. Predicted to act upstream of or within anion transmembrane transport and regulation of cilium assembly. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Orthologous to human VDAC3 (voltage dependent anion channel 3).

Ensembl:

ensembl_id ENSDART00000183684

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005810 lncRNA upstream 30011 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005670 lncRNA upstream 320325 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 795787 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 861921 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 895051 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00005672 lncRNA downstream 14517 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 534729 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 967367 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005813 lncRNA downstream 992625 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005814 lncRNA downstream 1012854 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00003642 mRNA upstream 143872 3145707 ~ 3155957 (+) False XLOC_001826
TCONS_00003643 mRNA upstream 144161 3153973 ~ 3155668 (+) True XLOC_001826
TCONS_00003640 mRNA upstream 169942 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003639 mRNA upstream 169942 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003638 mRNA upstream 169942 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003645 mRNA downstream 14434 3336772 ~ 3359189 (+) False XLOC_001829
TCONS_00003647 mRNA downstream 105856 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003648 mRNA downstream 108093 3430431 ~ 3455639 (+) True XLOC_001831
TCONS_00003649 mRNA downstream 185523 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003650 mRNA downstream 197918 3520256 ~ 3532997 (+) True XLOC_001833
TCONS_00003633 other upstream 273306 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 611148 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 1032472 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1634791 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2494470 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003646 other downstream 86445 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1170939 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1663712 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1813504 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1829011 5151349 ~ 5152401 (+) True XLOC_001855

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000168_01222730_01228035.mRNA True 1094 mRNA 0.49 8 CI01000168 1222485 ~ 1228035 (-)