RNA id: TCONS_00003645


Basic Information

Item Value
RNA id TCONS_00003645
length 1984
RNA type mRNA
GC content 0.52
exon number 12
gene id XLOC_001829
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3336772 ~ 3359189 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttgaaatgcttatTTGTCGCGGAAGCAGCAGCGCAGTTATTTATCTTTCATTCTCAGACGTCACTGCTCTTTTCCTTctaaagataaacaataatacatttaataatcgTTTATGGCATGTAGTTCTGCTATAAGAGCTATATCAAGggtcgtatttttgttttgtgtctaCAGGAGCAGTGTTGTGTTGAGTTGTGCTGCTTGTTGTGATATTTTTGTGTACCGCTGAACACATGAGTGTGTCTCTGGTTGTGATCAGACTCGAGCTCGCCGATCAGTCTGATTCTCCGCAGGGTTTTCACTACTGCGCCGTGTCAGAGATGTCTGAGGACGAGATGAGAGAGAAAGCTCTGGGTTCTGCGAAAGCCACGCTGGGTGGAAAAACGGACCTGGAGCGAGGAGCGATCCTCCATCAGCACCTAGGCAGCCGCGTCATGAGCGACATGGTGATCGAGACCTTTCAGCCCAGCACAGGAGCTGAGGAAGGTAAAGAAGGTGACGTCAGCCAGACAGATGTGAACATGACACCCGACTCTCCCTCCAAACAGCTGCCGGATCAGATCTCCTTTTTCAGTGGAAACCCATCGGTGGAGATCGTCCACGGCATCATGCACCTCTACAAAACTAATAAGATGACGTCACTAACGGAGGATGTGAGGCGGAGTGCGATGCTGTGTATCCTCACGGTACCCACCACCATGACCAGCCATGACCTCATGAAGTTCGTGGCTCCCTACAATGATGTCATGGAGCACATGAAGATTATCCGGGATTCCACGCCAAACCAGTACATGGTGCTGGTCAAGTTCAGGAGTCAGGCTGATGCCGACAGCTTCTACACAACGTGCAACGGCCGTCAGTTCAACTCCATTGAGGATGCCGTCTGCCAGTTGGTCTATGTGGAGAGAGCGGAAGTCATCAAATCTGAAGAGGGGGCCAGTTTACCTGTGATGGATCTGACGGAGCTGCCCAAGTGTACCGTGTGTTTGGAGCGCATGGACGAGTCAGTCAACGGCGTGTTGACCACTTTATGCAACCACAGCTTCCACAGCCAGTGTCTGCAGAGATGGGAAGATGCATCGTGTCCTGTGTGCAGATACTGTCAAACTCCTGAACCCGTCGAGGAAAACAAGTGTTTCGAGTGTGGCGTTCAAGAGAATCTGTGGATCTGTCTCATCTGCGGTCACATCGGCTGCGGACGTTACGTCAGTCGTCATGCTTACAAGCACTTTGAGGAAACGCAGCACACTTACGCCAtgcagctgaccaatcacagggTCTGGGACTATGCTGGAGATAACTACGTTCATCGGCTTGTTGCTAGTAAAACCGACGGGAAGATGGTGCAGTACGAGTGTGAGGGAGACACGTGTCAGGATGAGAAGATCGATGCGCTGCAGctcgagtattcatatttattaaccAGTCAGCTGGAGTCTCAGCGCATATACTGGGAGAATAAAATCGTTCATCTGGAAAAAGACACAGCAGAAGAGATCAACAACATGAAGGCCAAATTCAAGGAGACCATCGACAAGTGTGACAGTCTGGAGCGCAAACTCAACGAACTCGCCAAAGACAAACAGTCTATCGACAAGAAATGTTCCCAGCTGAACAATAAAGTGGCGAAGCTCAGTCAGGAGCTGCGGGAGGAGCAGGAGATGAACCGATGCCTGCGAGCCAATCAGACGCAGCTCCAGGCGCAGCTGCAGGAGGAGGAGAGGCGGGTCCAGGACACGGCGGCCAATAAGGACGGCCAGATCGCAGAGCTCCAGGAGCAGCTGAGAGATGTGATGTTCTACCTGGAGACGCAGCAGCAGATCGACCGCATGCCGGCAGACACGCGGCAGGAGATCCAGGAGGGCCAGATCAACATCGCCTCGGCCCCTGCAGCCCCGCAGCCTGGACCCTCAGCACACGGATCCGGAAAACTGACCGGACGTAAAGGACGATCCAAGAGGGGAAAGTagcaacaacaact

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040718-168 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Is expressed in lens. Orthologous to human BRAP (BRCA1 associated protein).

Ensembl:

ensembl_id ENSDART00000109148

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005671 lncRNA upstream 24334 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005810 lncRNA upstream 66954 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005670 lncRNA upstream 357268 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 832730 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 898864 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005811 lncRNA downstream 497878 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 930516 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005813 lncRNA downstream 955774 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005814 lncRNA downstream 976003 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005673 lncRNA downstream 1450694 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00003644 mRNA upstream 14434 3299829 ~ 3322338 (+) False XLOC_001828
TCONS_00003642 mRNA upstream 180815 3145707 ~ 3155957 (+) False XLOC_001826
TCONS_00003643 mRNA upstream 181104 3153973 ~ 3155668 (+) True XLOC_001826
TCONS_00003640 mRNA upstream 206885 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003647 mRNA downstream 69005 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003648 mRNA downstream 71242 3430431 ~ 3455639 (+) True XLOC_001831
TCONS_00003649 mRNA downstream 148672 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003650 mRNA downstream 161067 3520256 ~ 3532997 (+) True XLOC_001833
TCONS_00003652 mRNA downstream 516527 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003633 other upstream 310249 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 648091 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 1069415 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1671734 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2531413 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003646 other downstream 49594 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1134088 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1626861 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1776653 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1792160 5151349 ~ 5152401 (+) True XLOC_001855

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000168_01202307_01215499.mRNA True 2322 mRNA 0.49 13 CI01000168 1201791 ~ 1215499 (-)
bowfin (Amia calva) AMCG00018880 True 4527 mRNA 0.46 12 CM030135.1 24509478 ~ 24526970 (-)