RNA id: TCONS_00005672


Basic Information

Item Value
RNA id TCONS_00005672
length 576
lncRNA type sense_over
GC content 0.43
exon number 2
gene id XLOC_001829
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3336772 ~ 3359189 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagataaacaataatacatttaataatcgTTTATGGCATGTAGTTCTGCTATAAGAGCTATATCAAGggtcgtatttttgttttgtgtctaCAGGAGCAGTGTTGTGTTGAGTTGTGCTGCTTGTTGTGATATTTTTGTGTACCGCTGAACACATGAGTGTGTCTCTGGTTGTGATCAGACTCGAGCTCGCCGATCAGTCTGATTCTCCGCAGGGTTTTCACTACTGCGCCGTGTCAGAGATGTCTGAGGACGAGATGAGAGAGAAAGCTCTGGGTTCTGCGAAAGCCACGCTGGGTGGAAAAACGGACCTGGAGCGAGGAGCGATCCTCCATCAGCACCTAGGCAGCCGCGTCATGAGCGACATGGTGATCGAGACCTTTCAGCCCAGCACAGGTTTGCATCGCAAGTAGACACATGCCGATAATCAGTATATAGGGATAATCAACATGGACAATATTGATATTGCGGGGACTTCAAAATGccgtaaataattatttattatttaacaaaaagtgGTTGGAGACTTAATTAGTTAGCTTAAgagatgttttaattatttagtccTCCTGTGAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04121 Ubiquitin system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005671 lncRNA upstream 24417 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005810 lncRNA upstream 67037 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005670 lncRNA upstream 357351 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 832813 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 898947 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005811 lncRNA downstream 515451 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 948089 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005813 lncRNA downstream 973347 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005814 lncRNA downstream 993576 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005673 lncRNA downstream 1468267 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00003644 mRNA upstream 14517 3299829 ~ 3322338 (+) False XLOC_001828
TCONS_00003642 mRNA upstream 180898 3145707 ~ 3155957 (+) False XLOC_001826
TCONS_00003643 mRNA upstream 181187 3153973 ~ 3155668 (+) True XLOC_001826
TCONS_00003640 mRNA upstream 206968 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003647 mRNA downstream 86578 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003648 mRNA downstream 88815 3430431 ~ 3455639 (+) True XLOC_001831
TCONS_00003649 mRNA downstream 166245 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003650 mRNA downstream 178640 3520256 ~ 3532997 (+) True XLOC_001833
TCONS_00003652 mRNA downstream 534100 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003633 other upstream 310332 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 648174 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 1069498 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1671817 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2531496 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003646 other downstream 67167 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1151661 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1644434 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1794226 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1809733 5151349 ~ 5152401 (+) True XLOC_001855

Expression Profile

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