RNA id: TCONS_00036229


Basic Information

Item Value
RNA id TCONS_00036229
length 722
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_018433
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 48588679 ~ 48604653 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATTCATTTCATAGACTATATATAGGCTACTGTTGTACTCGACATTACACGGTTGCTAGCTTAGAGGTCACACATTTTCTAAACCTGTTGTGCACTTCTGTTATCTATCACACACAGCATTTAGATCCCGTTTTCTCCTCAGTCGTGAAGATGGTGGTTTTATCTAAAGAGTACGGATATGTGGCGCTAACCGGAGCGGCGTCGTTTCTCCTGATGGTTCATCTGGCACATGGCGTCGTGAAGGCTCGGAAGAAGTACAATGTCCCGTATCCAACAATGTACAGTGATGATCCAGAGACTGGCCGCATATTCAACTGTATCCAGCGAAGTCATCAGAACACTATTGAAATCCTGTCTCCATTCCTCTTTCATTTATCTGTGGGTGGGATTCAGCATCCACGTCTGGCCAGTGTGTTGGGGATGATCTGGATTGTCAGTCGGGTGCTTTACGCTCAAGGATACTCTACTGGAaAGCCTCAAAAGCGCCACCGTGGGACTTTCGGTATGGTTGCTTTAGTGGGACTGTTCTTTTGCACAGTGGACACCGGGAGAGTGATGCTCGGATGGGGACCTGGCATCAAATGGCCCAgatgttttaaataattcatattttttattatgcaatCTGATTCTATtccagttttacattttataaaattacCAGCAAACaaacagcaataataaaaaagcacactgtgtgtacatttaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004602 glutathione peroxidase activity molecular_function
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2767 Predicted to enable glutathione peroxidase activity and glutathione transferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and nuclear envelope. Is expressed in several structures, including alar plate midbrain region; brain; digestive system; immature eye; and pleuroperitoneal region. Orthologous to human MGST3 (microsomal glutathione S-transferase 3).

Ensembl:

ensembl_id ENSDART00000170894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036987 lncRNA downstream 476322 48110532 ~ 48112362 (-) True XLOC_018427
TCONS_00036986 lncRNA downstream 735245 47829454 ~ 47853439 (-) True XLOC_018422
TCONS_00036985 lncRNA downstream 1101717 47480436 ~ 47486967 (-) False XLOC_018418
TCONS_00036984 lncRNA downstream 1101717 47480436 ~ 47486967 (-) True XLOC_018418
TCONS_00036983 lncRNA downstream 1101747 47478772 ~ 47486937 (-) False XLOC_018418
TCONS_00036237 lncRNA upstream 134638 48738887 ~ 48788681 (-) True XLOC_018436
TCONS_00036516 lncRNA upstream 196520 48800769 ~ 48802522 (-) True XLOC_018437
TCONS_00036988 lncRNA upstream 354357 48958606 ~ 48979359 (-) True XLOC_018439
TCONS_00036989 lncRNA upstream 892191 49496440 ~ 49533803 (-) False XLOC_018443
TCONS_00036990 lncRNA upstream 967690 49571939 ~ 49605188 (-) False XLOC_018443
TCONS_00036227 mRNA downstream 71919 48488954 ~ 48516765 (-) True XLOC_018432
TCONS_00036225 mRNA downstream 103330 48482925 ~ 48485354 (-) False XLOC_018431
TCONS_00036226 mRNA downstream 103330 48484165 ~ 48485354 (-) True XLOC_018431
TCONS_00036224 mRNA downstream 118085 48452655 ~ 48470599 (-) True XLOC_018430
TCONS_00036223 mRNA downstream 180740 48292634 ~ 48407944 (-) True XLOC_018429
TCONS_00036235 mRNA upstream 89807 48694056 ~ 48700370 (-) False XLOC_018435
TCONS_00036234 mRNA upstream 89807 48694056 ~ 48700370 (-) False XLOC_018435
TCONS_00036236 mRNA upstream 90933 48695182 ~ 48701593 (-) True XLOC_018435
TCONS_00036238 mRNA upstream 206652 48810901 ~ 48898560 (-) False XLOC_018438
TCONS_00036240 mRNA upstream 256419 48860668 ~ 48877458 (-) False XLOC_018438
TCONS_00036200 other downstream 1510591 47077979 ~ 47078093 (-) True XLOC_018409
TCONS_00036196 other downstream 1705197 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036189 other downstream 1850370 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036182 other downstream 2131428 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036178 other downstream 2339499 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036233 other upstream 2888 48607137 ~ 48607244 (-) True XLOC_018434
TCONS_00036239 other upstream 207046 48811295 ~ 48898458 (-) False XLOC_018438
TCONS_00036251 other upstream 1208895 49813144 ~ 49813254 (-) True XLOC_018446
TCONS_00036257 other upstream 1747290 50351539 ~ 50351653 (-) True XLOC_018454
TCONS_00036258 other upstream 1756810 50361059 ~ 50361175 (-) True XLOC_018455

Expression Profile

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