RNA id: TCONS_00036263


Basic Information

Item Value
RNA id TCONS_00036263
length 613
RNA type nonsense_mediated_decay
GC content 0.52
exon number 4
gene id XLOC_018458
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 51131933 ~ 51186565 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTGCTCGTTGCTTTTTACTACGGATCCGGTGAACTTTCCGTGCGAGAAGCGAGTTGATATCGATTTGGTTTAAGTGGGTGTCCTGCCCAAGATGTCTTTCCCTCCTCATCTCAACCGGCCACAAATAGGCATCCCGACGTTGCCTCCAGGAATCCCTCCACCACAGTTTGCTGGATTTCCACCAACGATGCCTCCCGGTAATTATGATCAACTAGACCTGTcatgtagaccaggggttctcagtcttggtcctggagggccggtgtcctgcagattataATTCCAACCCCAATGaggcacacctgggctagctaatcaagctcttttgcCACGGCCACTCTTGCTGTGTTTCATTtgagaggctgcatcctccgaaggatgcagacttcaaagGAACCCCAATGATTCCTGTCCACATGGGGATTATGGCTCCAGCCCCTGCGGTTCTTGTGCCCACGACGATGTCTGTGGTTAGTAAAGTTGCTGCTCCCAGAAAGGAAAGCATAGCTGCTCATGCAAAAGATGACGACAGCAGCGGCCCCACGACCACTGTGTTTGTGGGGAACATCTCTGAAAAAGCCTCTGATATGCTGATCAGACAGCTGCTGGCT

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5547 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Orthologous to human RBM25 (RNA binding motif protein 25).

Ensembl:

ensembl_id ENSDART00000147413

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036259 lncRNA downstream 22140 51062867 ~ 51156171 (-) True XLOC_018456
TCONS_00037000 lncRNA downstream 829548 50341385 ~ 50348763 (-) True XLOC_018453
TCONS_00036999 lncRNA downstream 845767 50328920 ~ 50332544 (-) True XLOC_018452
TCONS_00036998 lncRNA downstream 845796 50328920 ~ 50332515 (-) False XLOC_018452
TCONS_00036997 lncRNA downstream 845822 50328920 ~ 50332489 (-) False XLOC_018452
TCONS_00036267 lncRNA upstream 154816 51341381 ~ 51341517 (-) True XLOC_018461
TCONS_00036268 lncRNA upstream 155599 51342164 ~ 51342733 (-) True XLOC_018462
TCONS_00036274 lncRNA upstream 183627 51370192 ~ 51377454 (-) True XLOC_018464
TCONS_00037001 lncRNA upstream 433332 51619897 ~ 51642348 (-) True XLOC_018467
TCONS_00037002 lncRNA upstream 621187 51807752 ~ 51822458 (-) False XLOC_018473
TCONS_00036260 mRNA downstream 77642 51088606 ~ 51100669 (-) True XLOC_018457
TCONS_00036256 mRNA downstream 938905 50238453 ~ 50239406 (-) True XLOC_018451
TCONS_00036255 mRNA downstream 1129212 50048836 ~ 50049099 (-) True XLOC_018449
TCONS_00036254 mRNA downstream 1163375 49940818 ~ 50014936 (-) True XLOC_018448
TCONS_00036253 mRNA downstream 1216314 49940818 ~ 49961997 (-) False XLOC_018448
TCONS_00036264 mRNA upstream 51081 51237646 ~ 51267192 (-) False XLOC_018459
TCONS_00036265 mRNA upstream 51561 51238126 ~ 51267185 (-) True XLOC_018459
TCONS_00036266 mRNA upstream 87732 51274297 ~ 51307815 (-) True XLOC_018460
TCONS_00036269 mRNA upstream 157740 51344305 ~ 51355501 (-) False XLOC_018463
TCONS_00036270 mRNA upstream 157811 51344376 ~ 51355508 (-) False XLOC_018463
TCONS_00036258 other downstream 817136 50361059 ~ 50361175 (-) True XLOC_018455
TCONS_00036257 other downstream 826658 50351539 ~ 50351653 (-) True XLOC_018454
TCONS_00036251 other downstream 1365057 49813144 ~ 49813254 (-) True XLOC_018446
TCONS_00036239 other downstream 2279853 48811295 ~ 48898458 (-) False XLOC_018438
TCONS_00036233 other downstream 2571067 48607137 ~ 48607244 (-) True XLOC_018434
TCONS_00036281 other upstream 514068 51700633 ~ 51727829 (-) False XLOC_018471
TCONS_00036283 other upstream 561932 51748497 ~ 51749168 (-) True XLOC_018472
TCONS_00036289 other upstream 957626 52144191 ~ 52144305 (-) True XLOC_018476
TCONS_00036308 other upstream 1499664 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other upstream 1499664 52686229 ~ 52691004 (-) True XLOC_018489

Expression Profile

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