RNA id: TCONS_00005811


Basic Information

Item Value
RNA id TCONS_00005811
length 819
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_001834
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3857067 ~ 3857885 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGCAAATAAGAGACTGTAACAGTGATATAAAGCAGTGCCTTACTCTGAATCGCGGGGACTTTTATTATGACGCATTGCCGCGCATTGATGTGGAGTGCTTCACAGTTCGGCGCACTTCCGATTTCTCCGTGAATCAGTCATTACGTTCACTCAACGAGGAGAGAAACGAGCCGAGCGAAGTCTGGAGACTCACGGCTGTATATGATTgctgtttgttcctgttagtttATAAAACTGTGTGCGTCCAGAGGAAAAGTGAGTACTGTGCATTCTGACTGAGTTTAAGGACATTACTGGAGGACTTTGTTTAAGTTTGAGTATGCAAAGCTGACATTATGAGTGAATGCTAATAAGGCCTATATCGTGAGGGAGCTCACATTCAGTTAAACTGTTATATTACAAGTTGTTTgttatgtagtcaaatattatgttcatTTATCTTAAATACTGCCTTATGTTCACATTTGGGGATGCCAGTAGTTCATGTAATTATGTCACATGTATGTATTGTGATTTATCTGTATTGTGGAAGGAGTAATAAGCACACATTAACAAATATGttctttattctgtttgtttacagaccacacacacacacacacaaacaccacacacGGCTCTACAAGTTCATACATGCATAGATGTATGCAAAGTTGGATCTATGCCGTCTTAAGGAAGATTTAAGCACAAGGCAATACAATCATCATCATCCAGTATCCATGCCCATTCCATGTATGTGGTTAGAAGACGTTAACATACAAGTTACAACTGGCTCCCCCTCTGCATATGACTGTAATCAATAAATCATTCAAGTATA

Function

GO:

id name namespace
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005672 lncRNA upstream 515451 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005671 lncRNA upstream 544629 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005810 lncRNA upstream 587249 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005670 lncRNA upstream 877563 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 1353025 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005812 lncRNA downstream 431820 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005813 lncRNA downstream 457078 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005814 lncRNA downstream 477307 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005673 lncRNA downstream 951998 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005815 lncRNA downstream 1103930 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003650 mRNA upstream 324070 3520256 ~ 3532997 (+) True XLOC_001833
TCONS_00003649 mRNA upstream 346191 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003648 mRNA upstream 401428 3430431 ~ 3455639 (+) True XLOC_001831
TCONS_00003647 mRNA upstream 404392 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003645 mRNA upstream 497878 3336772 ~ 3359189 (+) False XLOC_001829
TCONS_00003652 mRNA downstream 17831 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003651 mRNA downstream 17831 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003653 mRNA downstream 107680 3965565 ~ 4039786 (+) True XLOC_001835
TCONS_00003654 mRNA downstream 188563 4046448 ~ 4080048 (+) False XLOC_001836
TCONS_00003655 mRNA downstream 188563 4046448 ~ 4085216 (+) True XLOC_001836
TCONS_00003646 other upstream 448167 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 830544 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 1168386 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 1589710 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 2192029 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003658 other downstream 635392 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1128165 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1277957 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1293464 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 1887038 5744923 ~ 5769612 (+) False XLOC_001866

Expression Profile

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