RNA id: TCONS_00003652


Basic Information

Item Value
RNA id TCONS_00003652
length 6930
RNA type mRNA
GC content 0.56
exon number 24
gene id XLOC_001835
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3875716 ~ 4039786 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTAAGTGTTACGATGTGGTTTTTCACACCAATACTAATGTGCTTTCTTTCTGGTCCTCTTTCTTTCAGGCGTACTTCCGACAGGGTGTTGCCCTTCAGTACCTGGGCCGCCATGCGGACGCCCTGGCCGCCTTCGCCTCGGGATTGGCGCAGGATCCCAAGAGCCTGCAGCTGCTGGTGGGAATGGTGGAGGCCGCCATGAAGTCCCCACTAAGAGAATCACTAGAGCCGACCTACCAGCAGCTGCAGAAGATGAAGCTGGACAAGAGCCCGTTTGTGGTGGTATCTGTGATTGGTCAAGAGCTTCTGACCGCCTCCCATCATGGGGCATCAGTGGTGGTCCTGGAGGCGGCGCTGAAGATCGGCACCTGCAGCCTCAAACTGCGCGGCTCAGTTTTCTCGGCCCTCAGCAGCGCTTACTGGTCATTGGGCAACACCGAGAAAAGCACCGCATACATGCAGCAAGACTTAGAGGTGGCCAAAACTTTAGtgaccggcgAGTGTAGGGCGAGTGTTCTGAAAAGCATGAATGGAACTCAGACGtattacatccgccattttGCAGCATCTTCAGCCCTCAGCAGCCTGGGTCACGTCTACACAGCCATCGGGGACTATCCCAACGCTCTGGCCAGTCACAAGCAGTGCGTCCTGCTGGCCAAACAGTCCAAAGACCAGCTGTCTGAGGCCCGCGAGCTGGGCAACATGGGCGCAGTCTACATCGCGATGGGCGACTTTGACAACGCTGTGCAGTGCCACGAGCAGCACCTGAGCATCGCCAAGAGCCTCGGCAACAAGCGCGAGGAGGCCCGAGCCTACAGCAACCTGGGTAGCGCTTACCACTACCGCCGCAACTTCGACAAGGCCATGTCCTACCACACGCACGTGCTGGAGCTGGCGCAGGAGCTGGAGGAGAAGAGCATCGAGATGAGGGCGTACGCCGGCCTGGGACACGCTGCCCGCTGCATGCAGGACCTGGAGAGAGCCAAGCAGTACCATGAGCAGCAGCTGAGCATCGCTGAAGGCCTGAAGGACAGAGCCGCCGAGGGCAGGGCTTCATCTAACCTGGGAATCATTCACCAGATGAAAGGGGACTATGAGACTGCTCTGAAGCTGCACAAGGCTCATCTATCCATTGCCCAGGAGCTAAACGACTACGCTGCCCAAGGCAGAGCCTACGGAAACATGGGCAATGCTTACAATGCCCTCGGTGCTTTTGACCAGGCTGTGCGCTACCATCGACAAGAGCTGCAGATTTCCATGGAGGTTAATGATCGTGCCTCACAGGCTTCAACGCATGGGAACCTGGCTGTGGCATACCAGGCTCTTGGTGCACACGATCGAGCGTTGCAACATTACCAGAATCATTTGAACATTGCTCGAGAGTTGAGGGACATCCAGAGTGAGGCTAGGGCTTTGGGTAACCTGGGTAACTTCCACTGCTCTCGAGGTGAGTTTCCCCAAGCTGTACCCTACTACGAACAGTACTTACGACTTTCGCCGGACTTGCAAGATATGGAGAGTGAAGGCAAGGTCTGTCACAACTTGGGATATGCACACTACTGTCTGGGCAACTTCCAGGAAGCGGTGAAGTACTACGAACAAGACCTGGCACTTGCCAAGGACCTCCATGACAAGCTAAGTCAAGCCAAAGCCTACTGCAATCTGGGCCTGGCCTTCAAGGCACTTGGTGACTACACCAAGGCGGAAGAGTGCCAGAAGTACCTTCTTTCCTTGGCGCAGTCGCTAAACAACTCGCAGGCTCGTTTCCGTGCCTTGGGCAACCTGGGAGATATCTTCCTTTGTAAGAAAGACATTCCTGGCGCTGTTAAGTTTTACGAGCAGCAGTTATCCTTGGCACATAAGGTCAAGGACCGCAAGATGGAGGCGAATGCCTATGCCGCATTGGGAGCTGCCTACCGTATGCTACAGAAGTTTGACAAAGCCTTAGGATACCACACCCAGGAACTAGAGGTGTACCAGGAGCTGGGCGACATCCAGGGAGAGTGCCAGGCTCACGGGCACCTTGCAGCTGTATACATGTCACTTGGGAAGTACACAATGGCGTTCAAATGCTACGAGGAACAGCTTGAGCTCGGCCAACGTCTGAAGGACCCCAGCGTTGAAGCCCAGGTCTATGGTAACATGGGCATCACTAAAATGAACATGGGAGTAATGGAGGAAGCTATTGGATACTTTGAGCAACAGTTGGCAATGTTGCAGCAGCTCAGTGGCAATGAGGCTGTTCTGGACCGTGGTCGGGCCTACGGGAACTTGGGAGACTGCTACGACTCGCTGGGTGATTTCGAAGAGGCAATAAAGTATTATGACCAGTATCTCTCCGTGGCACAAAGCCTCAGCCATATGCAGGACCAGGAGAAGGCATACAGAGGTCTGGGTAATGGACACAGGGCGATGGGGAACCTTCAGCAGTCTCTGGTGTGTTTTGAGAAGCGGTTAGTGGTGGCGCATGAACTTGGAGAGTGTGGGGGAAAAGCTCAAGCTTACGGAGAACTGGGCAGCTTGCACAGCCAGCTGGGGAACTACGAGCAGGCCATCTCATGCCTGGAACGGCAGCTCGGCATCGCCCGCGACACCCAAGATCGATTGCTGGAGGGTGACGCCAGCTGTGGCCTGGGCGCTGTTTATCAGCTGATGGGCGAACACGACACAGCTCTTCAGTTTCACCAACTGGATCTCCAGATCGCAGAAGAGACAGGCAACGCCAGCTGTCAAGGTCGGGCCTACGGTAATCTCGGACTCACTTATGAGTCTCTGGGAAATTTCGAGCGAGCAGTGGTTTACCAGGAGCAGCATCTGAGCATCGCAGCACAGACCAATGACCTGGTGGCCAAAACTCTGGCATACAGCAGCCTGGGACGAACACATCACGCTCTGCAGAACTACTCACAGTCCGTCATGTACCTGCAGGAAGgTCTGCGTCTCGCCGAGCAGCTGGGTCGTCGGGAGGACGAGGCCAAAATCCGACACCGTCTGGGTCTCTCGCTGTGGGCCAGTGGCAATCTGGAGGAATCCCAGCACCAGGtagaacaaacacacagacacacacacacaaacacagccaaTTTACCactGTCCTCTGACCTTTTCTCAGGTCACCATGATGAAGCTCTGGCTGTGGCGGAGCGTGGACGCACTCGGGCCTTTGCTGACCTGCTGGTGGAGAGACAGACGGGTCAGCAGGACTCAGACCCTTACACACCTGTGACGGTGGAGCACATTCTGGACACTGTGAACGGGCAGCGGGCTCTGGTGCTCTACTTCTCCTTGGCGGCTGGATATCTGTACAGCTGGCTCCTGGCTCCGGGATCCGGTATCCTGAAGTTTCATGAGGTGTATCTGGGTGAGGGCTCATCGGAGGTTGGAGCTTCAGACTTCCAGGAAGGCGGAGCCTGTACACCCGCGGCCAGCAGCTGTGGAGGCTCGTCGCTAGAGCAGCACATCACTAATGCGCGTGAAGCCCTGGGTGTGGACTCATACTACAGCAGAGCGTGTTCCAGCAGCGAGACGGAGAGTGAAGCAGGCGACCTTCTGGACCAGCAGTTTGAAGAACTCAATAATAAACTCAACTCAGTGACGGACCCCACTGGCTTTCTGAGAATGGTTTCCAGAAACAACCTCTTCAACAGGAGTTGTCAGAGCATGACGAGTCTCTTCAGTAATACAGTGTCTCCAGTGAAGGAGGGCACATCGTCTCTGCCCCGTCGCACCAGTGCCCTCAGCAAACCTCCGCTACGAGCCCTTTATGACCTGCTTATCGCCCCAATGGAGGGGGGTCTAATGCATTCCAGTGGTCCGGTGGGTCGACACAGGCAGCTGGTTCTGGTTCTGGAGGGCGAGTTGTATCTAATCCCATTTGCTCTGCTGAAGGGAAGCTCATCTAATGAGTATCTGTATGAGCGCTTCAGTCTCATCGCCGTACCGTCTATCGGCAGTCTGGGGACCACAGCTAAAGTTCATCCACGGCGGACTGGTCCTCTTCTGTGTAATGGAGGAAGCTCCATGGCTGCAGTGGTCGGAAACCCTCGTCTGCCACCATCAGTGATGGACCGCTGGCTGTGGGGTCCGATGCCCACCGCTGAGGAGGAAGCTCATATGGTGGCTGATCTTCTAGGCTGTCAGCCGTTGGCCGGTCCTGCTGCCACAAAGGAGCGGGTTATGAGCGCTCTCACCCAAGCCGAGTGCGCCCATTTCGCAACGCATATCTCCTGGAAACTGGCAGCCCTTGTCCTGACGCCCAGCCAGGACAGCAACTCTGGATCCGGGTCAAACTACACCATCCCGGAGAGTCTGCGCGTGCCGGACGACGCAAGCGACGCTGAAAGCATCTGTGACAGCCCGCCGCTGCAAGAGTTTCTGCTCACCGCCGCAGATATCCTTGATCTCAGGCTGCCCACTAAACTTGTTGTGCTGGGGTCAGAGTCTGATAGTAAAGTGACTGCGGATGGAGTGGTTGGATTGACGAGGGCTTTCCTGGCGGCCGGAGCTCAGTGTGTGCTGGTGTCTTTATGGCCGGTTCCCGTTGCAGCCTCCAAGATGTTTGTTCATGCGTTCTACAGCGCTCTGCTTAATGGGACCAAGGCCAGCGCAGCGCTCGCCGACGCTATGAAGACTGTTCAGAGTAGCAAACAGTTCTCACACCCGTCCAACTGGGCAGGCTTTATGCTGATTGGGAGTGATGTGAAACTGAACAGCCCGTCATCTCTTATTGGTCAGGCTCTGGCTGAGATCCTGCAGCATCCAGAGAAAGCCAGAGATGCCCTGAGGGTTCTGCTACACCTGGTGGAGAAATCTCTCCAGCGCATTCAGAATGGCCAGAGGAACTCCATGTACACGTCTCAGCAGAGTGTAGAGAATAAAGTGGGTGGCGTGCCCGGCTGGCAGGCTCTTCTGACAGCAGTGGGATTCAGACTGGACTCGGCTGGAACGGGCCTCCCTGCGGCCGTCTTCTTCCCCACCACAGACCCCGGAGACCGACTGCAGCAATGCAGCACCACCCTACAGTCACTGCTGGGTCTGCCCCCTCCTGCTCTGCAGGCATTGTGTAAACTGATCACGGCTTCAGAAACCGGAGAACAGCTGATCAACCGGGCTGTTAAAAATGTTGTGGGAATGCTCCATCAGGTTTTGGTGCAGTTGCAGTCTGGAGAGAAGGAGCATGATTTCTCTCTCGCACCTATCCAAGTGTCCATCAGCGTGCAGCTCTGGAGACTTCCTGGCTGTCACGAGTTCCTGGCTGCATTGGGGTTTGACCTGTGTGAGGTCGGTCAGGAGGAGGTGGTGTTGAAGACGGGCAAACAGGCCAACCGTCGCACTATGCACTTTGCCCTGCAGTCGCTGCTGGCACTGTTTGACTCTACTGAGCTTCCGAAGCGTCTAAGCCTGGATAGTTCATCGTCTCTGGAGTCTCTGGCCTCTGCACAGTCTGTGTGCCACCAGCTGCCAATGGGCTACCCCAACCCGCCCTTTTCCCCTCCATGCCCTGACAGCCTGGCTTCGGATGCCATCTCGGTGTACAGCCTGAGCTCCATTGCCTCCTCCATGAGCTTCCTATCCCGTCCTGAGGGTGCGTCCGAGTTTATCAGCCAACGCTCAAGGCAGCAGGAACTGGAGCGGCATCGAGGGGGAGCTGGGCTCCGCTCATCTCCACATGGAGCCGTTGGAGGACATGAGGATGAAGAGTACGAAGGATACAGTATAATCAGTAGCGAGCCACTAGGTAGCCAATGTGACACACTCCCTCGTCCCGCAAACCACAGGAATCATCGAGGTGCTGCGCGTGGTGGGGCCGGTAGGGGTTATGCTGTGTCCGTGTCCTCCAGGGGAAGTGTAAGCACCCCAACGTCTCCTGTCAAAGCCACCTTGGTTCCCAGTCCCAACTCGCCCTTCCAGAAGGTTGGGAAGGTGAGCAGCTCTGACACAGGGGAGTCTGATCAGTCCAGCACAGAGACGGACAGCACTGTGAAATCCCAAGAGGAACGCACGCCCGGAGCTCCTTTGGACCCACAAGAACTGGCGCAAAAGATTCTGGAAGAAACGCAAAGCCACATGCGAGCTGTTGAGACGTTGCAGAGAAGTGTGCCTCTGGGTGACGGGATGAGTGGTGGAGGTCCCCCGACCCCAACAGGAGGGTCTGCTTTCCGATCTTCAGAGACAAGTGCATTCAGTCGTCCCAGTAGCAGGGCAAGCATCAAGGCACAGTCGTCGCCCCTTCCAGCACGCCCCAAACCACCATCCCGGACGTCCTCCCTCCAGAAGGTCAGCTCGGGATACAACAGTCCTGCCACATCCGAAACATCTCTTAAAGAAGGCAGCCAACCTTCACCTACTTCTGACAGTCATGCCCAGTTTAAACTCAAGTATCCCAGCTCGCCCTACAGCGGCCACATCTCCCGGTCACCTAGCAACATCTCACCTAGCTCAGGTCACCAGTCGCCAGCTGGAAGCGCTCCTTCTCCAGCTCTGTCCTACTCCTCCACTGGCTCAACACGCTCTAGTCCAGCAGACGCTCCAGATATTGACCGAATCAAACTGGCGGCAATTGACGAGAAAGTCCAAGCGATCCACAATCTTAAGACCTTCTGGGCCAACGCAACCCAACAGCAGCACTCGGGACCAATGCGGGCGCTACACGGCGGAAAACTGAGCACCGCCAAACGGGATGTTCTTGGTCTTTTGAACCTCTCTCCCCGGCATGGCATGACAGGTCAGGATTCCCCCAACCAGAATGTGGCACTCGAGCACAGAAATCCACCCAATGGCCATCGCAAGATCGATCCCAAGAGAGTTGCACCTTCTCCAACAGCTTCCACCAGAAGCAGTCCGGGTTTGCAACCTATCCGACTGCCTACAGGGAACGGCTACAAGTTCTTATCACCCGGACGGTTCTTCCCTTCATCTAAATGTTGA

Function

GO:

id name namespace
GO:0031109 microtubule polymerization or depolymerization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-140106-238 Acts upstream of or within microtubule polymerization or depolymerization. Is expressed in blastomere and nervous system. Orthologous to human TTC28 (tetratricopeptide repeat domain 28).

Ensembl:

ensembl_id ENSDART00000189268

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005811 lncRNA upstream 17831 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005672 lncRNA upstream 534100 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005671 lncRNA upstream 563278 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005810 lncRNA upstream 605898 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005670 lncRNA upstream 896212 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005812 lncRNA downstream 249919 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005813 lncRNA downstream 275177 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005814 lncRNA downstream 295406 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005673 lncRNA downstream 770097 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005815 lncRNA downstream 922029 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003650 mRNA upstream 342719 3520256 ~ 3532997 (+) True XLOC_001833
TCONS_00003649 mRNA upstream 364840 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003648 mRNA upstream 420077 3430431 ~ 3455639 (+) True XLOC_001831
TCONS_00003647 mRNA upstream 423041 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003645 mRNA upstream 516527 3336772 ~ 3359189 (+) False XLOC_001829
TCONS_00003654 mRNA downstream 6662 4046448 ~ 4080048 (+) False XLOC_001836
TCONS_00003655 mRNA downstream 6662 4046448 ~ 4085216 (+) True XLOC_001836
TCONS_00003656 mRNA downstream 56131 4095917 ~ 4112836 (+) True XLOC_001837
TCONS_00003657 mRNA downstream 196212 4235998 ~ 4259274 (+) True XLOC_001838
TCONS_00003659 mRNA downstream 460157 4499943 ~ 4508530 (+) True XLOC_001843
TCONS_00003646 other upstream 466816 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 849193 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 1187035 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 1608359 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 2210678 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003658 other downstream 453491 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 946264 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1096056 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1111563 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 1705137 5744923 ~ 5769612 (+) False XLOC_001866

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018875 True 687 mRNA 0.58 4 CM030135.1 24069954 ~ 24087249 (-)