RNA id: TCONS_00003654


Basic Information

Item Value
RNA id TCONS_00003654
length 816
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_001836
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4046448 ~ 4085216 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTGCTCATCAAGGAATATCGTGTGGTTTTACCATGCTCAGTGGAAGAGTATCAAGTTGGGCAGCTTTTCTCGGTGGCTGAAGCCAGTAAAAACGAGACGGGTGGCGGAGAGGGCATCGAAGTACTAAAGAATGAACCATATGAGAAGGAAGGAGAGAAGGgacaatacacacacaaaatctaCCACTTAAAAAGTAAAGTGCCAGGTTTTGTGAAGATGATCGCACCCGAAGGAGCTTTAGTTTTCCACGAAAAGGCCTGGAACGCTTATCCATACTGCCGCACAATTGTGACTAATGAATACATGAAAGATGACTTCATGATTAAAATTGAAACGTGGCACAAACCTGACACGGGCGCTTTAGAGAATGTACATGATTTGGATCCCATCACGTGGAAGACAGTGGAGGTCGTGCATATCGATATAGCTGACCGGTCTCAGGTTGAACCTGGGGATTATAAGCCAGAAGAGGACCCGGAAATCTTTCACTCAGAGAAAACAGGTCGGGGACCTTTAGGACCGGACTGGAAGAAAGAGCTGTTGGCCAAGCCGGACAGTCCTCGTATGTGTGCATACAAACTAGTCACTGTCAAGTTCAAGTGGTGGGGCCTTCAAACCAAAATAGAAAACTTCATACACAAGcAAGAGAAAAGAATCTTCACCAACTTTCACCGTCAGCTGTTCTGTTGGATCGACAACTGGGTTGAGCTCACCATGGAGGACATTCGCAGGATGGAGGAAGAGACGCAGCGAGAGCTGGAGGAGATGCGTCAAAAAGGAAACGTACGAGGCACAACAGCATCTGAAGAGTAG

Function

GO:

id name namespace
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0015914 phospholipid transport biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005548 phospholipid transporter activity molecular_function
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-895 Enables phosphatidylcholine transporter activity and phosphatidylinositol transfer activity. Acts upstream of or within photoreceptor cell outer segment organization. Located in trans-Golgi network. Is expressed in eye; retinal cone cell; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human PITPNB (phosphatidylinositol transfer protein beta).

Ensembl:

ensembl_id ENSDART00000123086

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005811 lncRNA upstream 188563 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005672 lncRNA upstream 704832 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005671 lncRNA upstream 734010 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005810 lncRNA upstream 776630 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005670 lncRNA upstream 1066944 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005812 lncRNA downstream 209657 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005813 lncRNA downstream 234915 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005814 lncRNA downstream 255144 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005673 lncRNA downstream 729835 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005815 lncRNA downstream 881767 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003652 mRNA upstream 6662 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003651 mRNA upstream 6662 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003653 mRNA upstream 6662 3965565 ~ 4039786 (+) True XLOC_001835
TCONS_00003650 mRNA upstream 513451 3520256 ~ 3532997 (+) True XLOC_001833
TCONS_00003649 mRNA upstream 535572 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003656 mRNA downstream 15869 4095917 ~ 4112836 (+) True XLOC_001837
TCONS_00003657 mRNA downstream 155950 4235998 ~ 4259274 (+) True XLOC_001838
TCONS_00003659 mRNA downstream 419895 4499943 ~ 4508530 (+) True XLOC_001843
TCONS_00003660 mRNA downstream 726275 4806323 ~ 4808611 (+) False XLOC_001844
TCONS_00003661 mRNA downstream 727865 4807913 ~ 4831218 (+) True XLOC_001844
TCONS_00003646 other upstream 637548 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1019925 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 1357767 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 1779091 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 2381410 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003658 other downstream 413229 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 906002 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1055794 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1071301 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 1664875 5744923 ~ 5769612 (+) False XLOC_001866

Expression Profile

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