RNA id: TCONS_00036311


Basic Information

Item Value
RNA id TCONS_00036311
length 1303
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_018492
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52825215 ~ 52846212 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCCGAGTGCACAgggcagaaaacacacacagtcctgcaGACAGCGGcttttacagacacacacacgcgttTATAGTGTTGTGTTTGAGAGTTAAAGATGCTAACAATGTGGACGTGATCTACAGTGTGATGTTTGACTGGTGAAAGGTTGTTTTGACTGACGCTTGAGGAAACCCGCTTGAGGCCCGTCTCCTGTCAGTGATCATGGCTGATGATCCTCAGAGAAACTTCCGCTCGGCGTATTATGAGAAAGTGGGTTTCAGAGGAGTGGAGGAGAAGAAATCACTGGAGATCCTGCTGAAGGACAACCCTCTGGATGTGGAGAAGCTGAGCACCTTCAGCCAGAGGTTTCCTCTGCCCTCCATGTACCGCATCCACGTGTGGAAAGTCTTGCTGGGGATTCTGCCTCCTCACAGTGACTCTCATGCTCTGGTGCGTCAGTATCGTGTGGATCAGTTTGAGGACGTGAGCTGCGCTCTGACCGTCATGCGCTTCATCCACGCCTCCACACCGCAGACAGAGATCTACCTGCGCATGTTCCAGCTGGAGAACCACACGCTGCCCCGCAGGACCGAGCTGCGGCCGCCCGATGCGGAGGATGAAAACTTCCTGGCGATCGCTCGAGCGATGGAGGAGATCGTGGATGACCCGGTGGACTGTTTCTGGCTCGTCAGATGCTTCATCAACCAGTTCAAGCACAAGTTTGGAGACTCCATCCCTCACCTGCCGAAGAGTCTGGAGCACTTCCTGTCTCAGGAGGATGTGTGTCTGCTGTCTCACCTGAAGGCGTCTGGAGCTCTGGCTTTACTACCGTACTCACTGTGGTTCAGACGCTGCTTCGCCGGCTGCTTACCAGAGTCCAGCCTACAAAGGGTGTGGGATAAAGTCATCAGCGGCTCCTGTAAGATCCTGGTGTTTGTAGCTGTGGAGATTCTGCTCAGCCATAAGATCGTGATAATGGGAATGAACCAGCCGGACGCAATTTACCACTTCCTGTCTAACATGCCGCAGGAAAACACGGACGCCATCGTCACCAAAGCCATCGATCTGTGGCACAAATACTGCGGGACGCCCATGCACTCTGTCTGAACaactgtgtgtgttagagagtgtgacagtgtgtgtttatgagtgttggagtatgcatgcgtgtgtgtgtttgtttgagaatGTGTTTgaatttgtgagtgtgtgttattTGTGCGTGTGTTTAAATGAACACATGAGGCaaattgtgtattatttatatgtaaaaagtGCTTCAAAATCCCCATTTGAAGATAAATAAACCCAATGACAGC

Function

GO:

id name namespace
GO:0070848 response to growth factor biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0031410 cytoplasmic vesicle cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04150 mTOR signaling pathway
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1747 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; negative regulation of TOR signaling; and response to growth factor. Predicted to be located in cytoplasmic vesicle. Orthologous to human TBC1D7 (TBC1 domain family member 7).

Ensembl:

ensembl_id ENSDART00000040265

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037011 lncRNA downstream 5599 52818807 ~ 52819616 (-) True XLOC_018491
TCONS_00036517 lncRNA downstream 148748 52673108 ~ 52676467 (-) False XLOC_018488
TCONS_00036518 lncRNA downstream 148793 52674005 ~ 52676422 (-) False XLOC_018488
TCONS_00036519 lncRNA downstream 148805 52674085 ~ 52676410 (-) False XLOC_018488
TCONS_00036520 lncRNA downstream 148805 52674195 ~ 52676410 (-) True XLOC_018488
TCONS_00037012 lncRNA upstream 127648 52973860 ~ 52995339 (-) False XLOC_018498
TCONS_00036521 lncRNA upstream 127648 52973860 ~ 52995339 (-) True XLOC_018498
TCONS_00036522 lncRNA upstream 441661 53287873 ~ 53292515 (-) True XLOC_018501
TCONS_00036329 lncRNA upstream 575938 53422150 ~ 53435452 (-) True XLOC_018503
TCONS_00037013 lncRNA upstream 958150 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00036310 mRNA downstream 119890 52702012 ~ 52705325 (-) False XLOC_018490
TCONS_00036309 mRNA downstream 119890 52702012 ~ 52705325 (-) True XLOC_018490
TCONS_00036306 mRNA downstream 159065 52663031 ~ 52666150 (-) False XLOC_018487
TCONS_00036305 mRNA downstream 159065 52663031 ~ 52666150 (-) True XLOC_018487
TCONS_00036304 mRNA downstream 182711 52639377 ~ 52642504 (-) False XLOC_018485
TCONS_00036313 mRNA upstream 5581 52851793 ~ 52882881 (-) True XLOC_018494
TCONS_00036314 mRNA upstream 40715 52886927 ~ 52902693 (-) False XLOC_018495
TCONS_00036315 mRNA upstream 51888 52898100 ~ 52902720 (-) True XLOC_018495
TCONS_00036316 mRNA upstream 61185 52907397 ~ 52939501 (-) False XLOC_018496
TCONS_00036317 mRNA upstream 74682 52920894 ~ 52928541 (-) True XLOC_018496
TCONS_00036308 other downstream 134211 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other downstream 134211 52686229 ~ 52691004 (-) True XLOC_018489
TCONS_00036289 other downstream 680910 52144191 ~ 52144305 (-) True XLOC_018476
TCONS_00036283 other downstream 1076047 51748497 ~ 51749168 (-) True XLOC_018472
TCONS_00036281 other downstream 1097386 51700633 ~ 51727829 (-) False XLOC_018471
TCONS_00036326 other upstream 562072 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other upstream 562367 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036338 other upstream 1149958 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036341 other upstream 1167212 54013424 ~ 54034543 (-) True XLOC_018509

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_08083189_08089291.mRNA True 1333 mRNA 0.51 7 CI01000029 8082757 ~ 8089291 (-)