RNA id: TCONS_00036319


Basic Information

Item Value
RNA id TCONS_00036319
length 627
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_018499
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53069721 ~ 53078607 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgaatgaatgtatatacagtagtcaGCATTTAAAGTGCATCAAAACAATCATCACCATTAATGAGGCCAAGAGACGGCAGAGCTTCAGCTTTGAGGACGAGGAGCCTGTGGATCTCCTGCCAGCACTGCTGGACCCAAGTGCACTGCTAGAGGACACACACATTGAGAAGTTGTCCACTCGTCTGCCAGCCCGTGTTCAGGGTTATCCGTGGCGTCTGGTCTACAGTACAGTCGTACACGGCACCAGCCTGAAAACACTCTACAGGAACCTGATGGTGCTGGACTGTCCTGTGCTGATGGTCATCAAAGACATGGACAACCAGATTTTTGGAGTGTTTTCCACACACCCTTTCAGAATGAGTGAACACTACTATGGCACAGGAGAAACCTTCCTCTACAGCTTCTGCCCCGAGATTAAGGTGTACCGCTGGACAGGGGAAAACTCCTACTTTGTAAAAGGGAACACAGATTCTCTTCAGATTGGAGGAGGAGAGGGTCTGGGGCTGTGGCTGGACGCTGATTTCTACCACGGCACCACCTCCAGATGCTCCACCTTCAACAACCAGCCGCTGTCCTCCAAACAGGACTTCACCATCCAGGACCTGGAGGTTTGGACCTTCGAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163494

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037012 lncRNA downstream 74382 52973860 ~ 52995339 (-) False XLOC_018498
TCONS_00036521 lncRNA downstream 74382 52973860 ~ 52995339 (-) True XLOC_018498
TCONS_00037011 lncRNA downstream 250105 52818807 ~ 52819616 (-) True XLOC_018491
TCONS_00036517 lncRNA downstream 393254 52673108 ~ 52676467 (-) False XLOC_018488
TCONS_00036522 lncRNA upstream 209266 53287873 ~ 53292515 (-) True XLOC_018501
TCONS_00036329 lncRNA upstream 343543 53422150 ~ 53435452 (-) True XLOC_018503
TCONS_00037013 lncRNA upstream 725755 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00037014 lncRNA upstream 725755 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00036335 lncRNA upstream 895445 53974052 ~ 53975812 (-) True XLOC_018507
TCONS_00036318 mRNA downstream 101843 52952116 ~ 52967878 (-) True XLOC_018497
TCONS_00036316 mRNA downstream 130220 52907397 ~ 52939501 (-) False XLOC_018496
TCONS_00036317 mRNA downstream 141180 52920894 ~ 52928541 (-) True XLOC_018496
TCONS_00036315 mRNA downstream 167001 52898100 ~ 52902720 (-) True XLOC_018495
TCONS_00036314 mRNA downstream 167028 52886927 ~ 52902693 (-) False XLOC_018495
TCONS_00036321 mRNA upstream 91362 53169969 ~ 53176675 (-) True XLOC_018500
TCONS_00036324 mRNA upstream 221981 53300588 ~ 53321499 (-) False XLOC_018502
TCONS_00036323 mRNA upstream 221981 53300588 ~ 53321499 (-) False XLOC_018502
TCONS_00036322 mRNA upstream 221981 53300588 ~ 53321499 (-) False XLOC_018502
TCONS_00036325 mRNA upstream 228135 53306742 ~ 53366137 (-) True XLOC_018502
TCONS_00036312 other downstream 242595 52827010 ~ 52827126 (-) True XLOC_018493
TCONS_00036308 other downstream 378717 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other downstream 378717 52686229 ~ 52691004 (-) True XLOC_018489
TCONS_00036289 other downstream 925416 52144191 ~ 52144305 (-) True XLOC_018476
TCONS_00036283 other downstream 1320553 51748497 ~ 51749168 (-) True XLOC_018472
TCONS_00036326 other upstream 329677 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other upstream 329972 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036338 other upstream 917563 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036341 other upstream 934817 54013424 ~ 54034543 (-) True XLOC_018509

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_08205518_08214627.mRNA True 1362 mRNA 0.51 8 CI01000029 8205470 ~ 8214627 (-)