RNA id: TCONS_00036330


Basic Information

Item Value
RNA id TCONS_00036330
length 1903
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_018504
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53600638 ~ 53624664 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acatacacaccagCCAGCAGCAGGTGCTAGTCGAGCTACTAGCTGAAATTTTCCACTGCCGATTAGTGAGTTTCAGTGAGCGCAGAGTTACCGCAGCACCAACATTACACTAACCACCAGCAGCTCACCGGACAGGCCTGTGGAAATAAACTCAGATTAAGCAGCTCGACTGATCCCGAATCAGTCCTTGACGCGGGGATGGACTTTCTGGCTGGATGCATAGGAGGTGCTGCTGGGGTGCTGGTGGGTCATCcgtttgacactgttaagGTCCGTCTTCAGGTTCAGAGTGTGGATAAACCTCTTTACCGCGGTACTTTTCACTGTTTCCAGTCCATCATACGGCAAGAGTCGGTGCTGGGTCTTTATAAAGGCATCGGTTCCCCTATGATGGGCCTGACGTTCATCAACGCCATCGTGTTCGGCGTGCAGGGGAATGCCATGCGCAGACTGGGCGAAGATACGCCACTGAACCAGTTTCTGGCGGGCGCAGCGGCCGGTTCTATCCAGTGTGTGATCTGCTGCCCGATGGAGCTGGCCAAAACACGCATGCAGATGCAGGGCACGGGCGAGAAGAAGTCCTCCTCCCGGAAAGTCTACAAGAACTCGCTGGACTGCCTGGCGCGCATTTATCAGCGTGAGGGTTTGCGCGGCGTCAACAGAGGGATGGTGACCACGCTAATCCGAGAAACGCCAGGATTTGGGGTTTATTTTCTGGCTTATGATCTGCTGACGCGTTCGCTAGGCTGCGAGCCGGATGATCCCTACATGATCCCCAAACTCCTGTTCGCCGGCGGCATGTCTGGAATCGCATCCTGGTTATCCACGTACCCGGTGGACGTGATAAAATCACGGCTGCAGGCAGACGGAGTCGGAGGAAAGTACCAGTACAGCAGCATTATGGACTGCACACGCAAGAGCATCCAGCGCGAGGGCTTTCGAGTGTTCACCAGAGGACTCACGTCCACTCTACTGCGCGCGTTCCCGGTTAACGCGGCCACTTTCGCAACCGTCACCTTATTTTTGTTGTACGTTCGTCCGGATGAAGGGTCTAAGGATTGCGAAGCTGCTCATCACGCAACGCTGCAGCAACAAGCGCAACCGTCCAGTCTGTGAGTAAATATACAGCTGTGTTTCCATTATAAATTAGATTATGTGCAAACTTGGAATATCGCAGACATTCGCAATTTATGGGTCAAAGAGAATCGTAAAACAATAGTGAGAGAAGTAGTGCTGTAGGATTCTCCACTGTGGGGTTTGTTCTCCTCTAATAAATgagttgcgcctcagaagacgaaaCGCAATGAACGCcttttgaaggcgtgagacgggAGCACAGACAGATACTCAAGACggttctggaggtaataataatagaagaagaATAATACTGATGACGGACTGATTATAAGCAGCACTACAACAATTTAGATCTTTTACATCATGTCCTAACTACACGCTTCGGCTCATGTAGAAGCTTATTTTCAATGTTAACAAAACAAGATTTTGTCCTGAAGATGCGTGAAAGCGATGCATGACATTTCTAATCTATTTCTGCACCGTCACactagaacaacagcataaactactataaCAATAATCACCGCCGCTGCtcatcatgtgctttattcagtgttaaatgctgctAATATTTGTCCAACTTtatgggtgtactcacactaggctattcAAACCGTACCCAGACACGTTTGACCTCCATTTCCAGGTAGGATTGACAAATGTGAGCGCTCTGAAATCGGGCTCAGGTGCATTTCAgttggcctggcctggctggttggaagaggtgtgccagagcgcggttcggTTGGGCTTTGCCAAAGTACGCTTGTCTTCAGTTTCGAGCTCAGGGGCGCTTACAgtacgagacgtgacttttaaggga

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006844 acyl carnitine transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015227 acyl carnitine transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000083427

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036329 lncRNA downstream 165186 53422150 ~ 53435452 (-) True XLOC_018503
TCONS_00036522 lncRNA downstream 308123 53287873 ~ 53292515 (-) True XLOC_018501
TCONS_00037012 lncRNA downstream 605299 52973860 ~ 52995339 (-) False XLOC_018498
TCONS_00036521 lncRNA downstream 605299 52973860 ~ 52995339 (-) True XLOC_018498
TCONS_00037011 lncRNA downstream 781022 52818807 ~ 52819616 (-) True XLOC_018491
TCONS_00037013 lncRNA upstream 179717 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00037014 lncRNA upstream 179717 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00036335 lncRNA upstream 349407 53974052 ~ 53975812 (-) True XLOC_018507
TCONS_00036523 lncRNA upstream 421533 54046178 ~ 54046733 (-) True XLOC_018510
TCONS_00037015 lncRNA upstream 425787 54050432 ~ 54051494 (-) True XLOC_018511
TCONS_00036328 mRNA downstream 165155 53414775 ~ 53435483 (-) False XLOC_018503
TCONS_00036325 mRNA downstream 234501 53306742 ~ 53366137 (-) True XLOC_018502
TCONS_00036324 mRNA downstream 279139 53300588 ~ 53321499 (-) False XLOC_018502
TCONS_00036323 mRNA downstream 279139 53300588 ~ 53321499 (-) False XLOC_018502
TCONS_00036322 mRNA downstream 279139 53300588 ~ 53321499 (-) False XLOC_018502
TCONS_00036332 mRNA upstream 273548 53898193 ~ 53963515 (-) False XLOC_018506
TCONS_00036333 mRNA upstream 288213 53912858 ~ 53949798 (-) True XLOC_018506
TCONS_00036334 mRNA upstream 342705 53967350 ~ 53981626 (-) False XLOC_018507
TCONS_00036336 mRNA upstream 357672 53982317 ~ 53996193 (-) False XLOC_018508
TCONS_00036337 mRNA upstream 357681 53982326 ~ 53992952 (-) False XLOC_018508
TCONS_00036326 other downstream 165162 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 165245 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 773512 52827010 ~ 52827126 (-) True XLOC_018493
TCONS_00036308 other downstream 909634 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other downstream 909634 52686229 ~ 52691004 (-) True XLOC_018489
TCONS_00036338 other upstream 371525 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036341 other upstream 388779 54013424 ~ 54034543 (-) True XLOC_018509

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_08568672_08576837.mRNA False 2928 mRNA 0.44 4 CI01000029 8567031 ~ 8577143 (-)