RNA id: TCONS_00036335


Basic Information

Item Value
RNA id TCONS_00036335
length 693
lncRNA type retained_intron
GC content 0.35
exon number 2
gene id XLOC_018507
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53967350 ~ 53981626 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACATCGATCAGGAGGAGCTGAACAAAACCAAACCGCTGTGGACCCGCAACCCTGATGACATCACCAACGAAGAGTACGGAGAGTTTTACAAGAGCCTGACCAACGACTGGGAGGATCATCTGGCTGTTAAGCACTTTTCAGTGGAAGGTCAGCTGGAATTTCGCGCGCTGCTTTTTGTCCCTCGTCGAGCTCCATTCGATCTGTTTGAGAACAAGAAAAAGAAGAATAACATCAAACTGTACGTGCGCAGGGTGTTCATCATGGACAACTGTGACGAGCTCATACCAGAATATCTCAGTAAGTGTCTGATCACAAACACTAATATCAGGTTTAATTGGTTGATGTTCACATTTtatgccttaaaaagtcttaaatacaCAGAAAAATTGTGTTGTAGGTATTAAATGATTGTAAATATGTCTTCATTTTAAATTTCTCTAAGTAAAGTTATCCAATCAGACAAATTACACACAATCCATCCTAATAGTTTTTTTGATGACACTttgcaataaggttgtattaatgaatattagttaatgcatttactaaaataaacaaacaataagcaATAAATTGggtacagtatttgttcatgttagtaaacactaataaaaatacatgttCATTGTTAATTTGTCAACTCACGATGCATAACTAAAGTAACTTGCataaatttgtatgttaataatgca

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0009409 response to cold biological_process
GO:0046677 response to antibiotic biological_process
GO:0034605 cellular response to heat biological_process
GO:0050821 protein stabilization biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0009986 cell surface cellular_component
GO:0043209 myelin sheath cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0097718 disordered domain specific binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031001-3 Predicted to enable ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Predicted to be involved in several processes, including cellular response to heat; protein stabilization; and response to cold. Predicted to be located in cytoplasm. Predicted to be part of protein-containing complex. Predicted to be active in several cellular components, including myelin sheath; neuronal cell body; and perinuclear region of cytoplasm. Is expressed in several structures, including immature eye; mesoderm; musculature system; nervous system; and pericardial region. Orthologous to human HSP90AA1 (heat shock protein 90 alpha family class A member 1).

Ensembl:

ensembl_id ENSDART00000154307

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037014 lncRNA downstream 163383 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00037013 lncRNA downstream 163406 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00036329 lncRNA downstream 538600 53422150 ~ 53435452 (-) True XLOC_018503
TCONS_00036522 lncRNA downstream 681537 53287873 ~ 53292515 (-) True XLOC_018501
TCONS_00037012 lncRNA downstream 978713 52973860 ~ 52995339 (-) False XLOC_018498
TCONS_00036523 lncRNA upstream 70366 54046178 ~ 54046733 (-) True XLOC_018510
TCONS_00037015 lncRNA upstream 74620 54050432 ~ 54051494 (-) True XLOC_018511
TCONS_00037016 lncRNA upstream 173385 54149197 ~ 54154194 (-) False XLOC_018513
TCONS_00037017 lncRNA upstream 176611 54152423 ~ 54154203 (-) False XLOC_018513
TCONS_00037018 lncRNA upstream 177463 54153275 ~ 54154189 (-) True XLOC_018513
TCONS_00036332 mRNA downstream 10537 53898193 ~ 53963515 (-) False XLOC_018506
TCONS_00036333 mRNA downstream 24254 53912858 ~ 53949798 (-) True XLOC_018506
TCONS_00036331 mRNA downstream 349388 53606783 ~ 53624664 (-) True XLOC_018504
TCONS_00036330 mRNA downstream 349407 53600638 ~ 53624645 (-) False XLOC_018504
TCONS_00036328 mRNA downstream 538569 53414775 ~ 53435483 (-) False XLOC_018503
TCONS_00036336 mRNA upstream 6505 53982317 ~ 53996193 (-) False XLOC_018508
TCONS_00036337 mRNA upstream 6514 53982326 ~ 53992952 (-) False XLOC_018508
TCONS_00036339 mRNA upstream 37400 54013212 ~ 54014539 (-) False XLOC_018509
TCONS_00036340 mRNA upstream 37505 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036342 mRNA upstream 91229 54067041 ~ 54075136 (-) True XLOC_018512
TCONS_00036326 other downstream 538576 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 538659 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1146926 52827010 ~ 52827126 (-) True XLOC_018493
TCONS_00036308 other downstream 1283048 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other downstream 1283048 52686229 ~ 52691004 (-) True XLOC_018489
TCONS_00036338 other upstream 20358 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036341 other upstream 37612 54013424 ~ 54034543 (-) True XLOC_018509

Expression Profile

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