RNA id: TCONS_00036336


Basic Information

Item Value
RNA id TCONS_00036336
length 2543
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_018508
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53982317 ~ 54012043 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAAGTTTCTGGATGGAGGGTTCGAGAAGCTCTGGTCTTAATATAAGGCGAGGACGCAGCAGATAACGGCAGACCCGCGACGAGAAGACTGGAGTACAACACCTCCAAACACAAAACCACTGCAAAGACTTTCTGCACTCGAGACGACCACACAGCAAGATGCCTGAGAAGTCGGCCCAGCCCGTgatggaggaggaggtggagaCGTTTGCGTTTCAGGCTGAGATCGCTCAGCTCATGTCTCTGATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGAGAGCTCATCTCCAACTCCTCTGATGCATTGGACAAGATCAGATATGAGAGCTTGACAGATCCGAGCAAACTGGATTCATGCAAGGACTTAAAGATCGAACTGATCCCAGACCAGAAAGAGCGCACGCTGACCATCATCGACACCGGCATCGGCATGACCAAAGCCGACCTGATCAACAATCTGGGCACCATCGCTAAATCCGGCACAAAGGCCTTCATGGAGGCTCTGCAGGCCGGAGCGGACATTTCTATGATCGGTCAGTTCGGTGTGGGCTTTTATTCTGCGTATCTGGTGGCCGAGAAAGTGACGGTCATCACCAAACACAACGATGATGAGCAGTACATTTGGGAATCTGCAGCTGGCGGATCGTTCACTGTCAAGCCAGACTTCGGTGAATCAATTGGACGTGGTACCAAAGTCATTCTCCACCTTAAAGAGGATCAGTCTGAATATGTGGAGGAAAAGCGCATTAAGGAAGTGGTGAAGAAGCACTCTCAGTTCATCGGTTACCCAATTACGCTTTACATTGagaaacagagagaaaaagaggtGGATCTTGAGGAAGGCGAGaaacaggaggaggaggaggttgcAGCAGGCGAAGACAAAGACAAACCCAAAATTGAAGATCTGGGAGCTGATGAAGATGAAGACTCTAAGGATGGCAAGAATAAGAGGAAGAAGAAGGTGAAGGAAAAGTACATTGATGCCCAGGAGCTGAATAAGACCAAGCCGATCTGGACCCGTAACCCCGATGACATCACCAATGAGGAGTACGGCGAGTTTTACAAGAGTTTAAGCAATGACTGGGAGGATCACTTGGCTGTCAAGCATTTCTCAGTTGAGGGCCAACTGGAGTTTCGCGCTCTACTTTTTGTACCCAGAAGAGCCGCTTTTGACCTTTTTGAGAACAAGAAGAAGAGAAACAACATTAAGTTATACGTGCGCAGGGTTTTCATCATGGACAATTGCGAGGAACTCATTCCAGAATATCTCAACTTTATTAAGGGTGTGGTGGACTCTGAGGATCTGCCTCTGAACATCTCCAGAGAAATGCTTCAACAGAGCAAAATCCTGAAGGTGATCCGCAAAAACCTGGTCAAGAAGTGTCTCGATCTCTTCACCGAACTGGCAGAGGATAAAGACAACTATAAGAAATACTACGAGCAGTTCTCCAAAAACATCAAGCTTGGCATCCACGAGGACTCTCAGAATCGCAAGAAACTTTCTGATCTTTTGCGCTACTACACTTCAGCTTCAGGAGATGAGATGGTGTCACTTAAAGACTATGTGTCTCGCATGAAGGACACACAGAAGCACATCTACTACATCACCGGTGAGACCAAAGATCAGGTGGCGAACTCAGCGTTTGTGGAGCGCCTCCGTAaagctggtctggaggtgatctaCATGATCGAGCCCATCGATGAATACTGTGTTCAGCAGCTGAAGGAATATGATGGCAAGAATCTGGTGTCGGTCACTAAAGAAGGCCTGGAGCTGCCCGAGGATGAAGAGGAGAAGAAGAAGCAGGATGAGCTGAAGGCCAAATATGAGAACTTGTGCAAGATCATGAAGGATATCCTCGACAAAAAGATTGAGAAGGTCACCGTCTCCAACCGTCTGGTGTCTTCGCCCTGCTGTATCGTCACCAGCACATACGGCTGGACGGCGAACATGGAGAGGATCATGAAGTCTCAGGCTCTGAGGGATAACTCTACCATGGGCTACATGACCGCTAAAAAGCACCTAGAAATAAACCCAGCACACCCCATCGTGGAGACCCTCAGAGAGAAAGCGGAAGCCGACAAAAACGACAAGGCGGTGAAGGATCTGGTGATCCTGCTGTTCGAGACGGCGCTCTTATCCTCAGGCTTCACACTGGACGACCCACAGACTCATGCAAACCGCATCTACAGGATGATCAAACTCGGACTTGGCATCGATGACGATGACTCTGTGGTCGAGGAAATCTCTCAACCCGCTGAAGAAGATATGCCCGTTCTGGAGGGAGACGACGACACTTCGAGAATGGAGGAAGTCGACTAAAGAGTTTTAGTGTACAAATAAAATccgtaatgtaatgtaatttattgtttttgtataaAACAATCCAGACATATCACAGTGAATGTTAGCTACTTTAAAGTCCTTGTAATTGCCTTGTGTGTCTGCTCTTGCATTTTATAATTCAAACTTTCTTTTTGTAAACCTAAGCTGAACGTTTTTAATAAATGACTCCTTATAAATAAA

Function

GO:

id name namespace
GO:0045429 positive regulation of nitric oxide biosynthetic process biological_process
GO:0048769 sarcomerogenesis biological_process
GO:0050900 leukocyte migration biological_process
GO:0007517 muscle organ development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0006457 protein folding biological_process
GO:0030239 myofibril assembly biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0034605 cellular response to heat biological_process
GO:0050821 protein stabilization biological_process
GO:0010038 response to metal ion biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005829 cytosol cellular_component
GO:0042470 melanosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031672 A band cellular_component
GO:0009986 cell surface cellular_component
GO:0030018 Z disc cellular_component
GO:0043209 myelin sheath cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0097718 disordered domain specific binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-94 Predicted to enable several functions, including ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Acts upstream of or within leukocyte migration; myofibril assembly; and response to metal ion. Located in Z disc. Is expressed in several structures, including immature eye; musculature system; paraxial mesoderm; pericardial region; and skeletal muscle myoblast. Orthologous to human HSP90AA1 (heat shock protein 90 alpha family class A member 1).

Ensembl:

ensembl_id ENSDART00000004756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036335 lncRNA downstream 6505 53974052 ~ 53975812 (-) True XLOC_018507
TCONS_00037014 lncRNA downstream 171648 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00037013 lncRNA downstream 171671 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00036329 lncRNA downstream 546865 53422150 ~ 53435452 (-) True XLOC_018503
TCONS_00036522 lncRNA downstream 689802 53287873 ~ 53292515 (-) True XLOC_018501
TCONS_00036523 lncRNA upstream 49985 54046178 ~ 54046733 (-) True XLOC_018510
TCONS_00037015 lncRNA upstream 54239 54050432 ~ 54051494 (-) True XLOC_018511
TCONS_00037016 lncRNA upstream 153004 54149197 ~ 54154194 (-) False XLOC_018513
TCONS_00037017 lncRNA upstream 156230 54152423 ~ 54154203 (-) False XLOC_018513
TCONS_00037018 lncRNA upstream 157082 54153275 ~ 54154189 (-) True XLOC_018513
TCONS_00036334 mRNA downstream 691 53967350 ~ 53981626 (-) False XLOC_018507
TCONS_00036332 mRNA downstream 18802 53898193 ~ 53963515 (-) False XLOC_018506
TCONS_00036333 mRNA downstream 32519 53912858 ~ 53949798 (-) True XLOC_018506
TCONS_00036331 mRNA downstream 357653 53606783 ~ 53624664 (-) True XLOC_018504
TCONS_00036330 mRNA downstream 357672 53600638 ~ 53624645 (-) False XLOC_018504
TCONS_00036339 mRNA upstream 17019 54013212 ~ 54014539 (-) False XLOC_018509
TCONS_00036340 mRNA upstream 17124 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036342 mRNA upstream 70848 54067041 ~ 54075136 (-) True XLOC_018512
TCONS_00036343 mRNA upstream 178785 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036344 mRNA upstream 200350 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036326 other downstream 546841 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 546924 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1155191 52827010 ~ 52827126 (-) True XLOC_018493
TCONS_00036308 other downstream 1291313 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other downstream 1291313 52686229 ~ 52691004 (-) True XLOC_018489
TCONS_00036341 other upstream 17231 54013424 ~ 54034543 (-) True XLOC_018509

Expression Profile

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