Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00036337 |
| length | 2375 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 10 |
| gene id | XLOC_018508 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 53982317 ~ 54012043 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045429 | positive regulation of nitric oxide biosynthetic process | biological_process |
| GO:0048769 | sarcomerogenesis | biological_process |
| GO:0050900 | leukocyte migration | biological_process |
| GO:0007517 | muscle organ development | biological_process |
| GO:0014866 | skeletal myofibril assembly | biological_process |
| GO:0006457 | protein folding | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0030240 | skeletal muscle thin filament assembly | biological_process |
| GO:0030241 | skeletal muscle myosin thick filament assembly | biological_process |
| GO:0071688 | striated muscle myosin thick filament assembly | biological_process |
| GO:0034605 | cellular response to heat | biological_process |
| GO:0050821 | protein stabilization | biological_process |
| GO:0010038 | response to metal ion | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0043025 | neuronal cell body | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0042470 | melanosome | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031672 | A band | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| GO:0043209 | myelin sheath | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0030235 | nitric-oxide synthase regulator activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0097718 | disordered domain specific binding | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| GO:0051082 | unfolded protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-94 | Predicted to enable several functions, including ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Acts upstream of or within leukocyte migration; myofibril assembly; and response to metal ion. Located in Z disc. Is expressed in several structures, including immature eye; musculature system; paraxial mesoderm; pericardial region; and skeletal muscle myoblast. Orthologous to human HSP90AA1 (heat shock protein 90 alpha family class A member 1). |
| ensembl_id | ENSDART00000170138 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036335 | lncRNA | downstream | 6514 | 53974052 ~ 53975812 (-) | True | XLOC_018507 |
| TCONS_00037014 | lncRNA | downstream | 171657 | 53804362 ~ 53810669 (-) | True | XLOC_018505 |
| TCONS_00037013 | lncRNA | downstream | 171680 | 53804362 ~ 53810646 (-) | False | XLOC_018505 |
| TCONS_00036329 | lncRNA | downstream | 546874 | 53422150 ~ 53435452 (-) | True | XLOC_018503 |
| TCONS_00036522 | lncRNA | downstream | 689811 | 53287873 ~ 53292515 (-) | True | XLOC_018501 |
| TCONS_00036523 | lncRNA | upstream | 53226 | 54046178 ~ 54046733 (-) | True | XLOC_018510 |
| TCONS_00037015 | lncRNA | upstream | 57480 | 54050432 ~ 54051494 (-) | True | XLOC_018511 |
| TCONS_00037016 | lncRNA | upstream | 156245 | 54149197 ~ 54154194 (-) | False | XLOC_018513 |
| TCONS_00037017 | lncRNA | upstream | 159471 | 54152423 ~ 54154203 (-) | False | XLOC_018513 |
| TCONS_00037018 | lncRNA | upstream | 160323 | 54153275 ~ 54154189 (-) | True | XLOC_018513 |
| TCONS_00036334 | mRNA | downstream | 700 | 53967350 ~ 53981626 (-) | False | XLOC_018507 |
| TCONS_00036332 | mRNA | downstream | 18811 | 53898193 ~ 53963515 (-) | False | XLOC_018506 |
| TCONS_00036333 | mRNA | downstream | 32528 | 53912858 ~ 53949798 (-) | True | XLOC_018506 |
| TCONS_00036331 | mRNA | downstream | 357662 | 53606783 ~ 53624664 (-) | True | XLOC_018504 |
| TCONS_00036330 | mRNA | downstream | 357681 | 53600638 ~ 53624645 (-) | False | XLOC_018504 |
| TCONS_00036339 | mRNA | upstream | 20260 | 54013212 ~ 54014539 (-) | False | XLOC_018509 |
| TCONS_00036340 | mRNA | upstream | 20365 | 54013317 ~ 54014373 (-) | False | XLOC_018509 |
| TCONS_00036342 | mRNA | upstream | 74089 | 54067041 ~ 54075136 (-) | True | XLOC_018512 |
| TCONS_00036343 | mRNA | upstream | 182026 | 54174978 ~ 54192130 (-) | True | XLOC_018515 |
| TCONS_00036344 | mRNA | upstream | 203591 | 54196543 ~ 54198130 (-) | True | XLOC_018516 |
| TCONS_00036326 | other | downstream | 546850 | 53408284 ~ 53435476 (-) | False | XLOC_018503 |
| TCONS_00036327 | other | downstream | 546933 | 53408579 ~ 53435393 (-) | False | XLOC_018503 |
| TCONS_00036312 | other | downstream | 1155200 | 52827010 ~ 52827126 (-) | True | XLOC_018493 |
| TCONS_00036308 | other | downstream | 1291322 | 52686229 ~ 52691004 (-) | False | XLOC_018489 |
| TCONS_00036307 | other | downstream | 1291322 | 52686229 ~ 52691004 (-) | True | XLOC_018489 |
| TCONS_00036338 | other | upstream | 3218 | 53996170 ~ 54012043 (-) | True | XLOC_018508 |
| TCONS_00036341 | other | upstream | 20472 | 54013424 ~ 54034543 (-) | True | XLOC_018509 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000029_08732049_08738371.mRNA | True | 2547 | mRNA | 0.46 | 11 | CI01000029 | 8731832 ~ 8738371 (-) |
