RNA id: TCONS_00037015


Basic Information

Item Value
RNA id TCONS_00037015
length 592
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id XLOC_018511
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54050432 ~ 54051494 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggatggatagacagacaagatgCATATACAGAGGGATGGATATATGGACATACCGATGGAAGgctacatggatggatggacagacgaatAGACATATGGAGGGATGGACagacagactggTAGACAGATACATGTACGGATGAAAGGATAGATATATtcatgaatagatggatgggcagatggaaCTGTaggttgtaaataatgtgatttctCTTCATAAGGGCTCCTCAGTGTTTGATCAGGAGGGATTGATGTTGAACTGTTATTATGCGTTTAATTTCATCTGGAAAACTGGtgaccattgacttacattataaTAATCTCCATGGATCCCAAactcagctaaaaatcttctttaaagttCTGCTGAATTAAAAAGAGCATCAGCAATGACTTGAAGGCGAGTAAACGAACTGTAAATTTTcgtttttgcgtgaactatccctttaattgtgaAGAAAACCCGAGCATTGCTGCATTTGTTTCCCTCTGGGTTGATTTAACGGTGAAATCTGCTCTGGATGTGAGTGTGAACAGTGATCTGAATGCGTCCGGTTTTTGGCTATACGACCGTCCCGCTGGGAGAGTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036523 lncRNA downstream 3699 54046178 ~ 54046733 (-) True XLOC_018510
TCONS_00036335 lncRNA downstream 74620 53974052 ~ 53975812 (-) True XLOC_018507
TCONS_00037014 lncRNA downstream 239763 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00037013 lncRNA downstream 239786 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00036329 lncRNA downstream 614980 53422150 ~ 53435452 (-) True XLOC_018503
TCONS_00037016 lncRNA upstream 97703 54149197 ~ 54154194 (-) False XLOC_018513
TCONS_00037017 lncRNA upstream 100929 54152423 ~ 54154203 (-) False XLOC_018513
TCONS_00037018 lncRNA upstream 101781 54153275 ~ 54154189 (-) True XLOC_018513
TCONS_00037019 lncRNA upstream 113391 54164885 ~ 54173299 (-) True XLOC_018514
TCONS_00036524 lncRNA upstream 167774 54219268 ~ 54228114 (-) False XLOC_018518
TCONS_00036339 mRNA downstream 35893 54013212 ~ 54014539 (-) False XLOC_018509
TCONS_00036340 mRNA downstream 36059 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036336 mRNA downstream 54239 53982317 ~ 53996193 (-) False XLOC_018508
TCONS_00036337 mRNA downstream 57480 53982326 ~ 53992952 (-) False XLOC_018508
TCONS_00036334 mRNA downstream 68806 53967350 ~ 53981626 (-) False XLOC_018507
TCONS_00036342 mRNA upstream 15547 54067041 ~ 54075136 (-) True XLOC_018512
TCONS_00036343 mRNA upstream 123484 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036344 mRNA upstream 145049 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036345 mRNA upstream 149965 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036346 mRNA upstream 162194 54213688 ~ 54245256 (-) False XLOC_018518
TCONS_00036341 other downstream 15889 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 38389 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 614956 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 615039 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1223306 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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