RNA id: TCONS_00036342


Basic Information

Item Value
RNA id TCONS_00036342
length 1987
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_018512
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54067041 ~ 54075136 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGATACTCCTTTTAGTATGTAGCCAATATTTCTTCACAAAAAGACTACCTACTTATAAATGGTAGTGCAAGTAGGCGAATTTGGGACACGGCAAACTGAATTAtgggtcgtgtgtgtgtgtgacatcacGCGTGCGCTGACAGCCGGGGCCCCCAGAGGTTTGACGGGATTGTGGGAGCCGAAGGTTCCGCTCGGAGCCTGAGCTAAAAACACACTCCTGGAGGAAAAAATGCGCTTTTATATGGACGTGACAGCCGACAAACACGTCTGCATCCGCGGTTACAGAGGGCGACACATTTGCCTCTAAGAAAATGCCTTATGGGAAACGATATCATTCGAATACATTCCAGAACGAAAGGACCAAGAATAAGCTGCATTTTCTATGCTAACGTTTTGTACCCAATCTGCTGGAGCAGACCTTTTCGTCAACATTGCAAACCTGCCATCCTCATCTACAGAATCGACCCACCGACCGTCCTGACGGGCGACTGCCTATCATGAGATTCAGAATTTACAAGCGAAAGGTGGTAATATTGACTCTAGTGGTGATAATCTGTGGATTCGCCGTCTGGAATAGTGGGAAGCCTAAGAAGGCGAGTACTGTGTTTCCTAAAGAAGTGGAAACGGTTAAACGGAGTAGTGTTGGAAGTCAGATACAAGCTACCATTCCAGTAACCCGAAAACCAATCAACGAGAGTATcccagaaaaacaacaacaacaacaacctgtTGCCAAATCAGAAGCAGACAACACCACCCTAGTGTACAGAGGAATCGTGTTCCAGCTCAACTTTGACCAGAATCTTAAAAACGAGGAAAAATTTCGAGCAGTGCGTCAAAAGGATGACCTTGTCATCGTCGTCCAAGTGCACAACCGTCCGGAATACCTACGCCTATTGGTGGACAGCTTGAGAAAGTCCAAAGGAATCGAAAACATCCTTCTGATATTCAGCCATGATTTCTGGTCTCCAGAAATCAACCAAATAGTGGCGTCTGTCGACTTCTGTTTGGTCCTTCAGATATTCTTCCCCTTCAGCATCCAACTCTACCCACAAGAGTTCCCTGGGAATGATCCCAGAGATTGTCCTCGAGACATTCCCAAGAAAGAGGCCTTAACCCTGGGCTGCATAAACGCAGAGTACCCAGACTCCTTCGGCCACTACCGGGAGGCCAAATTCTCCCAAACCAAACACCATTGGTGGTGGAAACTGCACTTTGTGTGGGATCGAGTCCGAGTCTTGAAGGATCACAAAGGACTGGTGTTGCTCATCGAAGAGGATCACTACCTCGCTCCAGACTTTTACCACCTTCTTAAACTGATGGCATCTCTAAAAAAAGAGCAATGTCCCGATTGCGATATCTTATCTCTGGGTAGCTACGGACACATCGGCTACTCGAGCAAAGCCAACAAAGTGGAGGTAAAAGCGTGGAAGTCCACCGAGCACAACATGGGAATGGCGCTGAACCGAGACGCCTATCAGAAACTTCTCAGATGCACCGATGCCTTCTGCACTTACGACGACTACAACTGGGACTGGTCCTTGCAGCATCTCACCGTGACCTGCCTGCCTGCATTTCTAAAGGTCATGGTTAGCGAGGCACCTCGTATTTTCCATGCCGGCGATTGCGGGATGCACCATAAGAAGTCGGCTTGCATGCCTAGTGGCCAGAAAACTAAGATTGAAAACGTTCTGCAGAACAGCGGGAATCAGCTGTTCCCCAAACAATTACTCATCACTAAGAGACTCCCAGCGTCTGGGGCCAAAGGAGTGGCTCCGCATGTCAAAAATGGCGGCTGGGGGGACATCAGGGACCATGAACTCTGCAAGAGCTACCTTCGATTACAGTGAACTTTATATATGATCttctttttggttgttttttgcaTCCTCTAATGAAAGCCTTTAAGAGTTCTTTATGGACGTCTTCTTCATATTGCCTGTTTTATTGAGATActccaaataaaaaaagtatgtgATGTTTGGA

Function

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0006487 protein N-linked glycosylation biological_process
GO:0005795 Golgi stack cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko04975 Fat digestion and absorption
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-070410-54 Predicted to enable alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within oligosaccharide biosynthetic process. Predicted to be located in Golgi stack and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Orthologous to human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase).

Ensembl:

ensembl_id ENSDART00000074255

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037015 lncRNA downstream 15547 54050432 ~ 54051494 (-) True XLOC_018511
TCONS_00036523 lncRNA downstream 20308 54046178 ~ 54046733 (-) True XLOC_018510
TCONS_00036335 lncRNA downstream 91229 53974052 ~ 53975812 (-) True XLOC_018507
TCONS_00037014 lncRNA downstream 256372 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00037013 lncRNA downstream 256395 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00037016 lncRNA upstream 74061 54149197 ~ 54154194 (-) False XLOC_018513
TCONS_00037017 lncRNA upstream 77287 54152423 ~ 54154203 (-) False XLOC_018513
TCONS_00037018 lncRNA upstream 78139 54153275 ~ 54154189 (-) True XLOC_018513
TCONS_00037019 lncRNA upstream 89749 54164885 ~ 54173299 (-) True XLOC_018514
TCONS_00036524 lncRNA upstream 144132 54219268 ~ 54228114 (-) False XLOC_018518
TCONS_00036339 mRNA downstream 52502 54013212 ~ 54014539 (-) False XLOC_018509
TCONS_00036340 mRNA downstream 52668 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036336 mRNA downstream 70848 53982317 ~ 53996193 (-) False XLOC_018508
TCONS_00036337 mRNA downstream 74089 53982326 ~ 53992952 (-) False XLOC_018508
TCONS_00036334 mRNA downstream 85415 53967350 ~ 53981626 (-) False XLOC_018507
TCONS_00036343 mRNA upstream 99842 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036344 mRNA upstream 121407 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036345 mRNA upstream 126323 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036346 mRNA upstream 138552 54213688 ~ 54245256 (-) False XLOC_018518
TCONS_00036347 mRNA upstream 174203 54249339 ~ 54259780 (-) True XLOC_018519
TCONS_00036341 other downstream 32498 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 54998 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 631565 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 631648 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1239915 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_08754053_08755396.mRNA True 1639 mRNA 0.49 1 CI01000029 8753942 ~ 8755580 (-)
mexican tetra (Astyanax mexicanus) TU34710 True 1985 lncRNA 0.33 2 NC_035899.1 43350895 ~ 43356027 (+)