RNA id: TCONS_00037016


Basic Information

Item Value
RNA id TCONS_00037016
length 319
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id XLOC_018513
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54149197 ~ 54154203 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGCCAGCGCTCGGTTTGTGGAGCAGATGAACGGATTCGGTCCGGTTTTGTCGCTTGAGTCCCGCGGagagccatgcgctcgagacggCCAGACTGACGAGATTCACCCGCGTTAAAGCCCTCGCTCCTGCTCAGCGCTCGCCGTGTTTAGAGACTCCACAGCGGCGGTGTTTCCAGTCCCATGTTGCAGCCGAACCAGCACGAACATGCCCGCTGTAAAGATCCGGTGAAATACGGAGAACTGGTGATCCTCGGCCCAAATGATGCTTGACTCTGGGCATCAGCAGTCTGGGTGGgacacttctttggggcttctcc

Function

GO:

id name namespace
GO:0033554 cellular response to stress biological_process
GO:0098536 deuterosome cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037015 lncRNA downstream 97703 54050432 ~ 54051494 (-) True XLOC_018511
TCONS_00036523 lncRNA downstream 102464 54046178 ~ 54046733 (-) True XLOC_018510
TCONS_00036335 lncRNA downstream 173385 53974052 ~ 53975812 (-) True XLOC_018507
TCONS_00037014 lncRNA downstream 338528 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00037013 lncRNA downstream 338551 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00037019 lncRNA upstream 10691 54164885 ~ 54173299 (-) True XLOC_018514
TCONS_00036524 lncRNA upstream 65074 54219268 ~ 54228114 (-) False XLOC_018518
TCONS_00037020 lncRNA upstream 65074 54219268 ~ 54236432 (-) False XLOC_018518
TCONS_00036525 lncRNA upstream 65855 54220049 ~ 54232434 (-) False XLOC_018518
TCONS_00036526 lncRNA upstream 73985 54228179 ~ 54232770 (-) False XLOC_018518
TCONS_00036342 mRNA downstream 74061 54067041 ~ 54075136 (-) True XLOC_018512
TCONS_00036339 mRNA downstream 134658 54013212 ~ 54014539 (-) False XLOC_018509
TCONS_00036340 mRNA downstream 134824 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036336 mRNA downstream 153004 53982317 ~ 53996193 (-) False XLOC_018508
TCONS_00036337 mRNA downstream 156245 53982326 ~ 53992952 (-) False XLOC_018508
TCONS_00036343 mRNA upstream 20784 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036344 mRNA upstream 42349 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036345 mRNA upstream 47265 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036346 mRNA upstream 59494 54213688 ~ 54245256 (-) False XLOC_018518
TCONS_00036347 mRNA upstream 95145 54249339 ~ 54259780 (-) True XLOC_018519
TCONS_00036341 other downstream 114654 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 137154 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 713721 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 713804 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1322071 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

//