RNA id: TCONS_00037018


Basic Information

Item Value
RNA id TCONS_00037018
length 283
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id XLOC_018513
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54149197 ~ 54154203 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCGCTCGGTTTGTGGAGCAGATGAACGGATTCGGTCCGGTTTTGTCGCTTGAGTCCCGCGGagagccatgcgctcgagacggCCAGACTGACGAGATTCACCCGCGTTAAAGCCCTCGCTCCTGCTCAGCGCTCGCCGTGTTTAGAGACTCCACAGCGGCGGTGTTTCCAGTCCCATGTTGCAGCCGAACCAGCACGAACATGCCCGCTGTAAAGATCCGGTGAAATACGGAGAACTGGTGATCCTCGGGATGAAGCAGCCAATCAGATGCTGATGTCGGC

Function

GO:

id name namespace
GO:0033554 cellular response to stress biological_process
GO:0098536 deuterosome cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037015 lncRNA downstream 101781 54050432 ~ 54051494 (-) True XLOC_018511
TCONS_00036523 lncRNA downstream 106542 54046178 ~ 54046733 (-) True XLOC_018510
TCONS_00036335 lncRNA downstream 177463 53974052 ~ 53975812 (-) True XLOC_018507
TCONS_00037014 lncRNA downstream 342606 53804362 ~ 53810669 (-) True XLOC_018505
TCONS_00037013 lncRNA downstream 342629 53804362 ~ 53810646 (-) False XLOC_018505
TCONS_00037019 lncRNA upstream 10696 54164885 ~ 54173299 (-) True XLOC_018514
TCONS_00036524 lncRNA upstream 65079 54219268 ~ 54228114 (-) False XLOC_018518
TCONS_00037020 lncRNA upstream 65079 54219268 ~ 54236432 (-) False XLOC_018518
TCONS_00036525 lncRNA upstream 65860 54220049 ~ 54232434 (-) False XLOC_018518
TCONS_00036526 lncRNA upstream 73990 54228179 ~ 54232770 (-) False XLOC_018518
TCONS_00036342 mRNA downstream 78139 54067041 ~ 54075136 (-) True XLOC_018512
TCONS_00036339 mRNA downstream 138736 54013212 ~ 54014539 (-) False XLOC_018509
TCONS_00036340 mRNA downstream 138902 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036336 mRNA downstream 157082 53982317 ~ 53996193 (-) False XLOC_018508
TCONS_00036343 mRNA upstream 20789 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036344 mRNA upstream 42354 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036345 mRNA upstream 47270 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036346 mRNA upstream 59499 54213688 ~ 54245256 (-) False XLOC_018518
TCONS_00036347 mRNA upstream 95150 54249339 ~ 54259780 (-) True XLOC_018519
TCONS_00036341 other downstream 118732 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 141232 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 717799 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 717882 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1326149 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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