RNA id: TCONS_00036343


Basic Information

Item Value
RNA id TCONS_00036343
length 1239
RNA type mRNA
GC content 0.64
exon number 7
gene id XLOC_018515
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54174978 ~ 54192130 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcttacaggaggaggagcgacagctcatgctccccctctctggagctcacctctcctcaaatggctctgcaGTATAATGGCTCTCTGCCGGGCGGAGACCGTGGCCGCAAGAGGAGCCGCTTTGCTCTTTACAGGAGGGCGAAAGCTAACGGAGTCAAGCCGAGCGCGGTGCACATCCTCAGCAGCCCACACGACAGCAAGGCGGTGAACAGCAGGGGGCAGCACAGCATCTCCTTCACCCTCTCCAGGAACCAGACGGTGGTGGTGGAGTATTGCCATGACAATGACACCGACATGTTCCAGATCGGCCGGTCCACCGAGAGCCCCATAGACTTCGTGGTGACAGACACTCCAGGAGGATCCAAGGAGAGCGAAGACTCCTCATCAGCTCCCAGCACCATCTCCCGCTTCGCCTGCAGGGTCGTCTGCGAACGCAACCCGCCGTACACCGCTCGCATCTATGCTGCCGGCTTTGACTCCTCTAAAAACATCTTCCTGGGGGAGAAAGCGACCAAATGGAAGAATCCGGATGGTCACATGGACGGCCTCACAACCAATGGGGTGCTGGTGATGCATCCGCTGGGCTTCCCGGAAGAGCCCAAGCAGGGTCTGTGGAGGGAGATCTCGGTGTGTGGAGACGTGTACGCCCTCAGAGAGACACGCTCCGGCCCCATCCGTGGACAGCTGGCTCAGGGTGAGAGCAGCGCTCTGCAGGACGGGTCTCTGGTGGATCTGTGTGGGGCGACGCTGCTGTGGCGAACAGCTGACGGGCTGCTGAAAGCGCCAACGCTGCGGCACCTGGACGCCCTGCGGCTGGAGCTGAACGCGGCGAGGCCTCAGTGTCCGGTGGGTTTGAGCACGCTGGCCTTTCCCAGCCTCCCTCGCAGCCACAGCCTGGAGGAGCGCCAGCCTTGGGCCTACCTGAGCTGCGGACACGTGCATGGCCGGCACGACTGGGGCCAGCGACCCGAGCGAGAGTGCCCGCTGTGCCGGACAGTCGGCCCCTATGTGCCGCTGTGGCTGGGCTGCGAGCCGGCGTTCTACATGGATGCTGGAGCTCCCACACACGCCTTCGCCTCCTGCGGACATGTGTGCTCCGAGAAGACGGTGCGGTACTGGGCGGAGACGCCACTGCCCCACGGCACACACGCCTTCAGGCCCACCTGCCCCTTCTGCTCCGCCCCGCTGGCGGGAACGCCCGGATATACACGCCTCATCTTCCAAGGGCCCATCGATTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000020834

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037019 lncRNA downstream 1679 54164885 ~ 54173299 (-) True XLOC_018514
TCONS_00037017 lncRNA downstream 20775 54152423 ~ 54154203 (-) False XLOC_018513
TCONS_00037016 lncRNA downstream 20784 54149197 ~ 54154194 (-) False XLOC_018513
TCONS_00037018 lncRNA downstream 20789 54153275 ~ 54154189 (-) True XLOC_018513
TCONS_00037015 lncRNA downstream 123484 54050432 ~ 54051494 (-) True XLOC_018511
TCONS_00036524 lncRNA upstream 27138 54219268 ~ 54228114 (-) False XLOC_018518
TCONS_00037020 lncRNA upstream 27138 54219268 ~ 54236432 (-) False XLOC_018518
TCONS_00036525 lncRNA upstream 27919 54220049 ~ 54232434 (-) False XLOC_018518
TCONS_00036526 lncRNA upstream 36049 54228179 ~ 54232770 (-) False XLOC_018518
TCONS_00036527 lncRNA upstream 36417 54228547 ~ 54233154 (-) False XLOC_018518
TCONS_00036342 mRNA downstream 99842 54067041 ~ 54075136 (-) True XLOC_018512
TCONS_00036339 mRNA downstream 160439 54013212 ~ 54014539 (-) False XLOC_018509
TCONS_00036340 mRNA downstream 160605 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036336 mRNA downstream 178785 53982317 ~ 53996193 (-) False XLOC_018508
TCONS_00036337 mRNA downstream 182026 53982326 ~ 53992952 (-) False XLOC_018508
TCONS_00036344 mRNA upstream 4413 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036345 mRNA upstream 9329 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036346 mRNA upstream 21558 54213688 ~ 54245256 (-) False XLOC_018518
TCONS_00036347 mRNA upstream 57209 54249339 ~ 54259780 (-) True XLOC_018519
TCONS_00036348 mRNA upstream 168138 54360268 ~ 54381034 (-) False XLOC_018522
TCONS_00036341 other downstream 140435 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 162935 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 739502 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 739585 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1347852 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_09091229_09095666.mRNA False 2721 mRNA 0.48 5 CI01000029 9091103 ~ 9097013 (+)