RNA id: TCONS_00036526


Basic Information

Item Value
RNA id TCONS_00036526
length 879
lncRNA type sense_over
GC content 0.54
exon number 4
gene id XLOC_018518
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 54213688 ~ 54245256 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCACTTCCTGTCAGAAGAGGAGTTCGTGTCGTTGCGAGTGGAGCTGGCGAATGCAAATAAACCCAGCGGAGACGAGGACGCAGAGACTGAAGCTCCTGGGGAAGAACTGCCGCCAGGCACCGAGGACCTGCCAGACCCTGCTAAGCCAATGAAAACCTGAGGGTCCAGGTTGGCATCCAATCAGGGGCTAAAAGCGGGACGGGGGTCTCGTGACGAAATGGCACCGCCCCTCCCAGCACCCACCGCCGCAGCCGATTCACTGGAGAGTGACGGAGATCGAGAACATGCGGCACAAAGTGATCGAGACGCGCCAGGAGATGTTCAACCACAACGAGCACGAAGTCAGCAAACGCTGGGCCTTCGAGGAGGGGATCAAGCGTCCGTATTTCCACGTCAAAGCGCTGGAGAAGACGCAGCTGAACAACTGGCGGGAGTACCTGGATTTTGAGCTGGAGAACGGGACGCCGGAGCGGGTAGTGGTGCTGTTCGAGCGCTGTCTGATCGCCTGCGCGCTCTACGAGGAGTTCTGGATCAAGGTAAATCCGCTTTTCTGTCGCCGCGCGCCCTCCGCCATGCCCTCTGTCCACCCTATGCTTCCCCATCAACGAATTCATCACTTCCACAGTAAAACTTGCTGCACTCTTTGCGTGTAACGTTGATATTTGACTGTATCTGTTATATTAGGGGATGGCCTGCTTGCCACACAAGATTTGACTGCAGCATTTGCCAACTACGTTGCACCTCTCCGTCTCCTTCTACCTTACAGAATCTTATCTTATTGGTTCCATGAAGGTGCTGATGGGTTTAACACAGAAATTCTCAAAACGATCTTGTCAATGGAAATTCAGCAGTGGCGAGGATGTGAAATGAAGGTTCAA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000395 mRNA 5'-splice site recognition biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0000243 commitment complex cellular_component
GO:0071004 U2-type prespliceosome cellular_component

KEGG:

id description
ko03041 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036524 lncRNA downstream 65 54219268 ~ 54228114 (-) False XLOC_018518
TCONS_00037019 lncRNA downstream 54880 54164885 ~ 54173299 (-) True XLOC_018514
TCONS_00037017 lncRNA downstream 73976 54152423 ~ 54154203 (-) False XLOC_018513
TCONS_00037016 lncRNA downstream 73985 54149197 ~ 54154194 (-) False XLOC_018513
TCONS_00037018 lncRNA downstream 73990 54153275 ~ 54154189 (-) True XLOC_018513
TCONS_00037021 lncRNA upstream 38121 54270891 ~ 54271454 (-) False XLOC_018520
TCONS_00037022 lncRNA upstream 38121 54270891 ~ 54271455 (-) False XLOC_018520
TCONS_00037023 lncRNA upstream 38305 54271075 ~ 54271440 (-) True XLOC_018520
TCONS_00037024 lncRNA upstream 106941 54339711 ~ 54345412 (-) True XLOC_018521
TCONS_00036529 lncRNA upstream 250995 54483765 ~ 54488224 (-) True XLOC_018525
TCONS_00036345 mRNA downstream 19835 54201459 ~ 54208344 (-) True XLOC_018517
TCONS_00036344 mRNA downstream 30049 54196543 ~ 54198130 (-) True XLOC_018516
TCONS_00036343 mRNA downstream 36049 54174978 ~ 54192130 (-) True XLOC_018515
TCONS_00036342 mRNA downstream 153043 54067041 ~ 54075136 (-) True XLOC_018512
TCONS_00036340 mRNA downstream 213806 54013317 ~ 54014373 (-) False XLOC_018509
TCONS_00036347 mRNA upstream 16569 54249339 ~ 54259780 (-) True XLOC_018519
TCONS_00036348 mRNA upstream 127498 54360268 ~ 54381034 (-) False XLOC_018522
TCONS_00036349 mRNA upstream 128214 54360984 ~ 54377933 (-) True XLOC_018522
TCONS_00036350 mRNA upstream 186822 54419592 ~ 54435287 (-) True XLOC_018523
TCONS_00036352 mRNA upstream 204283 54437053 ~ 54462551 (-) False XLOC_018524
TCONS_00036341 other downstream 193636 54013424 ~ 54034543 (-) True XLOC_018509
TCONS_00036338 other downstream 216136 53996170 ~ 54012043 (-) True XLOC_018508
TCONS_00036326 other downstream 792703 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other downstream 792786 53408579 ~ 53435393 (-) False XLOC_018503
TCONS_00036312 other downstream 1401053 52827010 ~ 52827126 (-) True XLOC_018493

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU385903 True 9577 lncRNA 0.36 2 CI01000122 549630 ~ 560880 (-)
rainbow trout (Oncorhynchus mykiss) TU385903 True 1947 lncRNA 0.50 6 NC_048568.1 29947940 ~ 29952115 (-)