RNA id: TCONS_00003659


Basic Information

Item Value
RNA id TCONS_00003659
length 2013
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_001843
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4499943 ~ 4508530 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACATACTCAGGACTATAcctgtaAATAGCGGGAAGatgtgtgaacacacacacagcagagccAGTGAAAGCAGACGAAGGAAATTAGAGGATACTTCATATGCCACTCAAGAAATGTCACGCATTGTCACGGATTCAGCCACTGGGAAATGTTACTGTAGAGGGAAAGTTTTAGGCAAGGGCGGTTTTGCCAAGTGCTATGAATTTACAGATCTAAGCACAGGCAAAATGTATGCAGCCAAAATCATTCCACACACACGCGTTTCCAAACCTCACCAAAGGGAAAAGATTGATAGAGAAATCGAATTGCACAGAGCCCTGCATCACAAACACATTGTTCAGTTCTACCATCACTTCGAGGACAAAGACAACATTTACATCCTACTTGAATACTGCAGCAGACGGTCACTAGCACACATTCTCAAGGCCCGAAAAGTGCTTACAGAACCAGAGGTTCGGTACTACTTAAAACAGATTGTCTCGGGACTGAAGTATCTACATGAGCAAGAGATTCTGCACAGAGACCTTAAACTAGGTAACTTCTTCATCAATGAATTTATGGAACTGAAGGTTGGAGACTTTGGTCTGGCTGCAAAACTGGAGCCGCTTGAGAACCGTCGAAGAACAATATGTGGGACACCAAACTACTTGTCACCTGAAGTCCTCAACAAGCAAGGGCACGGTTGTGAATCTGATGTCTGGGCCCTCGGCTGTGTGATGTATACCATGCTGTTGGGAAGACCCCCATTTGAAACCACAAACCTTAAAGAAACGTATCGATGTATACGAGAAGCACGATACTCAACGCCATCATCTTTGTCGCCTCAAGCCAAGCATCTCATTAGCAGTATGTTGGCCAAGAATCCTGTGGATAGGCCACAATTGTGTGATATTCTTCGCCATGACTTTTTCTGCCAGGGTTTCACACCAGACAGACTGTCTGCTAACTGTTGTCATGCAGCCCCAGACATCCACCACACAAGTCCTGCTAAGAGTTTCTTCAAGAAAGCTGCAGCTACCCTGTTTGGTGGGAAGAAGGACAAAGCAAAGTATTTGGAGACTCGAAATAAGCCTGCCAAGGAAGAGgaagaaataaacataaacagaCTTTGCATAGACCTTCGGAAAACATCAGTTAGTCCTCAACCCTGCAGACAAACCCTTGAGAACAATAAACCCTCCATTCCGTCTGCTGGAAAACCAGCTGTCTTGACAAAGGACGCCAGCAGCAAACAGCACATTAGAGACAGCATTCGAATGATAGTGCGAGGGACTCTTAGGAGCTGCAGTAGCAGCAGCAGCGAATGTCTTGAGAACTGCACGGTGGGAAGCGTTGCAGACACCGTGGCCAGAGTACTACAAGGCTGTCTCGAGAACATGTCGGAAGCTAATAACATATCAAAAGAAAGCATGAACAGCAGCTTCCAGTGGGTGACAAAGTGGGTGGACTATTCCAACAAGTACGGTTTTGGCTATCAGTTGTCAGATCACACAGTCGGCGTTCTCTTCAACAATGGCACTCACATGAGCCTGCTGTCGGACAAAAAGACTGTGCATTACTATGCAGAGCTGGGACAATGTTCAGTCTTCTTAACAAGTGAAGCTCCAGAGCAGTTTGTTGGCCAGGCCACCATCCTAAAATACTTTGCCCACTACATGGAGGAGAATCTGATGGATGGAGGAGATTTACCCAATATTACGGATGCAAACAAACCAAGATTGTACCTTCTTCAGTGGCTCAAATCTGATCAAGCATTGATGATGCTCTTCAATGACGGCACTTTCCAGGTGAACTTTTACCACGATCACACCAAGATAATCCTGTGCAATCACCGAGAGGAATACTTACTGACATACATCAACGAGGAACGCGTGTCCACCACGCTGCGACTCAGCACTCTGCTTGCGTCTGGATGCTCAGCGGATCTGCAAAGTCGCATGGACTATGCACTTAACATGCTGTTGCAGAGATGTGGAGACGTAACTGATGGGAAATCGAGGATGCTTTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0016310 phosphorylation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-71 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in mitotic cell cycle and regulation of cytokinesis. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in blood vessel; brain; nervous system; and vasculature. Orthologous to human PLK2 (polo like kinase 2).

Ensembl:

ensembl_id ENSDART00000125299

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005814 lncRNA upstream 158297 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005813 lncRNA upstream 181080 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005812 lncRNA upstream 200093 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005811 lncRNA upstream 642058 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005672 lncRNA upstream 1158327 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005673 lncRNA downstream 301353 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005815 lncRNA downstream 453285 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003665 lncRNA downstream 454045 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00003667 lncRNA downstream 455980 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005674 lncRNA downstream 479236 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003657 mRNA upstream 240669 4235998 ~ 4259274 (+) True XLOC_001838
TCONS_00003656 mRNA upstream 387107 4095917 ~ 4112836 (+) True XLOC_001837
TCONS_00003655 mRNA upstream 414727 4046448 ~ 4085216 (+) True XLOC_001836
TCONS_00003654 mRNA upstream 419895 4046448 ~ 4080048 (+) False XLOC_001836
TCONS_00003651 mRNA upstream 460157 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003660 mRNA downstream 297793 4806323 ~ 4808611 (+) False XLOC_001844
TCONS_00003661 mRNA downstream 299383 4807913 ~ 4831218 (+) True XLOC_001844
TCONS_00003662 mRNA downstream 366012 4874542 ~ 4911001 (+) False XLOC_001846
TCONS_00003663 mRNA downstream 366732 4875262 ~ 4911001 (+) True XLOC_001846
TCONS_00003664 mRNA downstream 415858 4924388 ~ 4934610 (+) True XLOC_001847
TCONS_00003658 other upstream 6585 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1091043 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1473420 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 1811262 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 2232586 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003668 other downstream 477520 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 627312 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 642819 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 1236393 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 2575241 7083771 ~ 7210108 (+) False XLOC_001887

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000168_00594523_00598420.mRNA True 3089 mRNA 0.46 13 CI01000168 594523 ~ 599715 (+)