RNA id: TCONS_00005673


Basic Information

Item Value
RNA id TCONS_00005673
length 369
lncRNA type intronic
GC content 0.40
exon number 1
gene id XLOC_001845
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4809883 ~ 4810251 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaATATAGCCCAcggtcagtgcaaacctctcatctacgTCTTTAACcttcaccagcacatgttgcCTCTTGTTAGAACgtaattccgtcattctgagttcattagtccaaaaggcgatgataaacatggcagttcatgttttaggttgcagaagcatcatttgctgctgttttttccagcttctcttttgtttttttgcgCTTTACTCTTGCATTTGACTTGTTCTGAAAGGATCGAATATCAGAGTGCTTCAATGATCACGTGGAGgttattaatatgagctcaaaaAGTTCGTTACTTCAAATTTAGACACGATCGTGAGCTCTCTGGACAAAGTGAAACCGCTTGCATTTTAGatgggctcgtaaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0048769 sarcomerogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042383 sarcolemma cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0031672 A band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0031430 M band cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005814 lncRNA upstream 468237 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005813 lncRNA upstream 491020 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005812 lncRNA upstream 510033 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005811 lncRNA upstream 951998 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005672 lncRNA upstream 1468267 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005815 lncRNA downstream 151564 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003665 lncRNA downstream 152324 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00003667 lncRNA downstream 154259 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005674 lncRNA downstream 177515 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003677 lncRNA downstream 339129 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00003660 mRNA upstream 1272 4806323 ~ 4808611 (+) False XLOC_001844
TCONS_00003659 mRNA upstream 301353 4499943 ~ 4508530 (+) True XLOC_001843
TCONS_00003657 mRNA upstream 550609 4235998 ~ 4259274 (+) True XLOC_001838
TCONS_00003656 mRNA upstream 697047 4095917 ~ 4112836 (+) True XLOC_001837
TCONS_00003655 mRNA upstream 724667 4046448 ~ 4085216 (+) True XLOC_001836
TCONS_00003662 mRNA downstream 64291 4874542 ~ 4911001 (+) False XLOC_001846
TCONS_00003663 mRNA downstream 65011 4875262 ~ 4911001 (+) True XLOC_001846
TCONS_00003664 mRNA downstream 114137 4924388 ~ 4934610 (+) True XLOC_001847
TCONS_00003666 mRNA downstream 154212 4964463 ~ 4969208 (+) False XLOC_001849
TCONS_00003669 mRNA downstream 177515 4987766 ~ 4996049 (+) True XLOC_001851
TCONS_00003658 other upstream 316525 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1400983 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1783360 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 2121202 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 2542526 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003668 other downstream 175799 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 325591 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 341098 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 934672 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 2273520 7083771 ~ 7210108 (+) False XLOC_001887

Expression Profile

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