RNA id: TCONS_00003662


Basic Information

Item Value
RNA id TCONS_00003662
length 3272
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_001846
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4874542 ~ 4911001 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTGACTGAAATCTTTACAATTCaattaaaaacactataaaatgaTAAACCTACAGAGTGTATTATGAAGATAAACAAACATCCTAAtgatttggaatgacatgaggatgaCTAAAcgatgaactaatcctttaagaaTTGAAGCTGTTGAAACTGCATATTTTCCTTGTGCTGTGGTGAACGTTAGCTTCAGCTtcttagatgtgtgtgtgtgtaaactcatCTAGTATGAGTAAGAGAATTCAGCCAGTGTACTCGGAATCAGATCCACACCCAGCCGCACTGCGCTTTTCCTTGTAAGGTGTCTGCCGGCCGGTGGAGGAGTTTTAGAGACTCCCTCTGTCCAGGACTTGGACACAGCACTGATTGTAAGAGTACAGGACACAGGACACACCCCCTCTTTTAAAACCACACCCCCTTTATTCATGACATCATAGCCAATAGTTAGACAGAGCAAGAATTTTGACTCTGGTGGGACagacaagagagagagaggggggcaTTGTTGGAGAACGGACGGAAACTGAGGCCGGTGCCGTGGGgtgagtgaacacacacacacacacacacacacacgaggaaGAAGGGCGGGGGTTGGAAGACGTGGTCAGGAAAAGCCCTGCGTTGTGTTGTCCTGGGCATGGTTTCACTGGGTCTCCTCAAAGGTTTATAGTTTGAGGTGTTGGAAGAGGACTGTTCTCACATTACACATTTGACAACGGGACACTCAGGACTTCTAGCATGCGGTGATTTGTTTCTTTCACATGAAGGATTTCTAGTTTTGTGGACAGAAGTCTGTTAACTAGTTTGGAAAATTATGAAAAAGAAGTCCCCTGTACACTCAGAGGATGACAGTGAGCTGAAAAGAGACAGAAGCCTGAAGACAGTAAGTTTTTTCGATTCTGTGAGTGTCATATCCGGAGGTCAGAGCAATATGGAGCTTGGAGTTCAGACTGAGACCCAGCAAAGTTACATGAGCAGTGGACAGAATAAAGTGAAGCATGGGGGAGAAGGACTGGACAGCGAAGTTGCCCAGGAAATCCTTTACCTGGATGAGGTCCTTGAGGCCAACTGTTGTGATCCCAGAGCCGAAATGACTTCAAATGGGACAAGTTCCCCTGACACAGAGTCAATTAGAGTTCATGGAACTGGACCATCTGTGCACACTTGTGACACAACGGCCTTAAACCATCATGAAGTTGTTTTAGAAGGGAAAAAGCAGACAACTTTTGTTGATGATAATTACAACACCAAACCTAATGGTCATGCGGCGATGATAGGAAATAATGGCACAAGGTCACCTGAGTCGCCTAGGACGGCAATGAAGAAAGAGGCACGTTTTGAGCTGCGACCATTTCACGAAGAGAAAAAGCCATCGAAACTGTTTGACACCCCAACTGAGAAAGAAATTCGGGTGAAGAAAGTGAGACCCTCAGAAGAGGTCGCAGAGCTAGAGAGGGAAAGGCTGGAACTCATCCGGGGACAGGCAGTCAAGAAAAACCCTGGCATTGCAGCAAAATGGTGGAACCCACCTCAGGAAAAGACACTGGAAGAGGAGCTGGAACCAGAGCAGCTGGAGTCGCTTCGAAAGTATGAGGAGAGGAAGCAAAGGAAACCAGAAACCAACCGTATGCCGCAAGCTGCACCCAGACAGACTACCACCTTCATCCAACCTGAAATAGCAAATAAGGAGGACGTTGTCATGGAAGAGATTGACTTTTCTGCAGCTCGCAAGCAATTTCTGCAGATGGAACAAAGCAAGCATCCCACGGTCCCTAAGAGGAATGTGGCACCACAGCTTTACTCAGCCAAACCTTTCTTCAGGACTCCAGAGGTCACGCATGTAGAGAGGTCGTGCGGTTCTGTCACTGTTGCCAATCAGGAAGGGGTCACATCCTACGATGGAAGTGAAGTTACAACAGTCAAAGCTGAAAAGATTTACTGCTGCTCTGGAGAATCCTTCATACCCACGAAAGATGGATTATCTCAGAACGAGATGAAGGATGATGACTTTACTTGTGCCCGGGCAGTGATGACCATAGTGAAGGATGAGGATGTCGATTTGTGTCAACGTTCTTTCAACAGCTCCCACCACACAGAAGAAATCGACTCTGGGTTGGATGATCTATCACTACGGTCTCAGGACACCACTGTACTTGAGACGCTCTCCAATGACTTCAGTATGGATAACATAAGTGACAGCGGTGCATCAAATGAGACTATGAGTGCCTACTTGGAAAACTCTCTTGGGGAGTACTCTTTTCCCTCAACCCCGATGGCAACTACACCAATCAATGGAAAACACGAAATCAGTATCAAATCTCCAGGGGATCAGATTGGGACTTATCAGGGAGATGGTTTAACAGAAGAAGAGTTGGAATATCATGCTGGTATTCTTGTCCAAAACGCTATCCAGCAAGCCATTGCTCAGCAGAATGACAAATGGGAGCCACTTCAGGCTACACAACATTCGTCCCCCATCACAGAGAGACATGTGGAAAGTGTTCAACCACAACCCCTAGTGGAAAGACCCACTGTCACGCCACCTCCCAAAGTGCCATCCCCCCTACAGGAGAAAGAAACGGCTCCTCAAATAACTATAGCTCAAGCCACCCCAGTAATTCCAATGAACAATTACAAACCTCCCAGTCCGTCTCCTCCACCAAACGAGAAGCCAGAGTTCAGCTACTTCAGTAAGTACTCTGAGGCGGCAGAGCTCAGGAGCACCGCAACCGTCACTCGTGCTCAGGAAACAGAAGTGACCTCAGGGCCGTTCAAGCTGCGCTCACGCAAACAGAGGACCCTGTCCATGATCGAGGAGGAGATTCGAGCAGCACAGGAGCGCGAGGAGGAGTTGAAGAGACAACGGCAGGCGCAAACATTGCACCCACCGCGTGCACAAAAGCTGAAGGCCAGCACTCAGCCAAGCAAGCTGGTCCTCACTGGGAAGACAGCACCAGGTAAAATTGAGAAGGTTCGTCCAGCTCCTCCAGCCTCCCCTTGCTCTTCAGACGGAGCTCTGCCGTCGCCTCTGTCTGATCTGGGCAGTGATGATTCTGGAGGAGCTCAGAGACCCAAGAACTTCATGCAGACTTTGATGGAGGACTTCGAGACACACAAAGTCAAGCGCAGGGAGAAAGCCGAGGACAACAGTGTTCTGGAAGCAACGCGAGTGACTCGCAGAAAAAGTAACATGGCTGTCCGGTGGGAGGCCGGCATTTATGCCAACCAGGAAGACGccgaggaggaggaagaggaagaagaagagtaA

Function

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-62 Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Orthologous to human PALM2AKAP2 (PALM2 and AKAP2 fusion).

Ensembl:

ensembl_id ENSDART00000101431

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005673 lncRNA upstream 64291 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005814 lncRNA upstream 532896 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005813 lncRNA upstream 555679 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005812 lncRNA upstream 574692 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005811 lncRNA upstream 1016657 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005815 lncRNA downstream 50814 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003665 lncRNA downstream 51574 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00003667 lncRNA downstream 53509 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005674 lncRNA downstream 76765 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003677 lncRNA downstream 238379 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00003661 mRNA upstream 43324 4807913 ~ 4831218 (+) True XLOC_001844
TCONS_00003660 mRNA upstream 65931 4806323 ~ 4808611 (+) False XLOC_001844
TCONS_00003659 mRNA upstream 366012 4499943 ~ 4508530 (+) True XLOC_001843
TCONS_00003657 mRNA upstream 615268 4235998 ~ 4259274 (+) True XLOC_001838
TCONS_00003656 mRNA upstream 761706 4095917 ~ 4112836 (+) True XLOC_001837
TCONS_00003664 mRNA downstream 13387 4924388 ~ 4934610 (+) True XLOC_001847
TCONS_00003666 mRNA downstream 53462 4964463 ~ 4969208 (+) False XLOC_001849
TCONS_00003669 mRNA downstream 76765 4987766 ~ 4996049 (+) True XLOC_001851
TCONS_00003670 mRNA downstream 114695 5025696 ~ 5037449 (+) True XLOC_001852
TCONS_00003671 mRNA downstream 149190 5060191 ~ 5090210 (+) False XLOC_001853
TCONS_00003658 other upstream 381184 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1465642 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1848019 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 2185861 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 2607185 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003668 other downstream 75049 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 224841 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 240348 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 833922 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 2172770 7083771 ~ 7210108 (+) False XLOC_001887

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_02314977_02384157.mRNA True 3423 mRNA 0.50 7 CI01000304 2314977 ~ 2384157 (-)