RNA id: TCONS_00003665


Basic Information

Item Value
RNA id TCONS_00003665
length 454
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_001848
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4961815 ~ 4963300 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttcgcATTTGCGCAGTTCTGAACAGCAGGTGTCGCTAGTGTCTGAGTTCTGAACGCTTCGAATCCCTGAATCATTTGGCAAAGCTGCTGATTCGAATCTTTGAGGAAAAAAAGCTTCGTTTCTCCCTTCACTAGGCGGCAGTGATGTGTTACTGTGACTGAAGAAAACACAGAGGAAACAAAAGCAGAAGAAACACTCCCTCCATGTGGACGTGGTCTGTTTCTGGAGAAGCTTGAGCTGGCAGTCGCGAGAGTAAGACAAAGGATCGAGTGTCCGGGCGAGAAACACGTGCGCCAGATTCAGCTCATCTCTTAATAAacgttttataaaatataaatgttccCTTTCTTGTGTTGTGGtgtttaatttgtacttttatgCTGTTCTGGTCTGTGAAatccaataaatttgttttttaacacatttgtgttgGTATTGCGTGAATTATGTTCC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005673 lncRNA upstream 152324 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005814 lncRNA upstream 620929 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005813 lncRNA upstream 643712 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005812 lncRNA upstream 662725 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005811 lncRNA upstream 1104690 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00003667 lncRNA downstream 1210 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005674 lncRNA downstream 24466 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003677 lncRNA downstream 186080 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00003678 lncRNA downstream 186169 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00005675 lncRNA downstream 269027 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00003664 mRNA upstream 27965 4924388 ~ 4934610 (+) True XLOC_001847
TCONS_00003662 mRNA upstream 51574 4874542 ~ 4911001 (+) False XLOC_001846
TCONS_00003663 mRNA upstream 51574 4875262 ~ 4911001 (+) True XLOC_001846
TCONS_00003661 mRNA upstream 131357 4807913 ~ 4831218 (+) True XLOC_001844
TCONS_00003660 mRNA upstream 153964 4806323 ~ 4808611 (+) False XLOC_001844
TCONS_00003666 mRNA downstream 1163 4964463 ~ 4969208 (+) False XLOC_001849
TCONS_00003669 mRNA downstream 24466 4987766 ~ 4996049 (+) True XLOC_001851
TCONS_00003670 mRNA downstream 62396 5025696 ~ 5037449 (+) True XLOC_001852
TCONS_00003671 mRNA downstream 96891 5060191 ~ 5090210 (+) False XLOC_001853
TCONS_00003672 mRNA downstream 96961 5060261 ~ 5090392 (+) True XLOC_001853
TCONS_00003658 other upstream 469217 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1553675 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1936052 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 2273894 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 2695218 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003668 other downstream 22750 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 172542 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 188049 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 781623 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 2120471 7083771 ~ 7210108 (+) False XLOC_001887

Expression Profile

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