RNA id: TCONS_00003667


Basic Information

Item Value
RNA id TCONS_00003667
length 378
lncRNA type retained_intron
GC content 0.32
exon number 2
gene id XLOC_001849
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4964463 ~ 4969208 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAACAAGACTTCTGCATGATGGGGACACGCTTGAAGGTGCTCCGGGTGTTCAAAGATCTGCACAGGACCAGAAGAGATGTTTTTAGAGATGATAACAGAGCTCTGACAGGTATCAGCCAGTATTTTAGTCAGCCTTAAACATTATACCTGTAGTATAGTATAGACAGTATCTATTTGTACTTCTCTTATACTGTTTGTAGTTATTGCTTTTTATACACTTGCATTGTCAAatacaagtttatttattttatgtgtggTTCTTTTGTTAGGAATGTTATTTTCCTACAAGATTGTAGTTTCTGTCCTGTTTTTTTTCACTTGTTTATGTTCCAAATCTAAATATTGTCAAATtaatcaatgttttatttatttaaata

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070615-32 Predicted to be located in mitochondrial matrix. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 8. Orthologous to human LYRM7 (LYR motif containing 7).

Ensembl:

ensembl_id ENSDART00000144284

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005815 lncRNA upstream 1210 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003665 lncRNA upstream 1210 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00005673 lncRNA upstream 154259 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005814 lncRNA upstream 622864 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005813 lncRNA upstream 645647 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005674 lncRNA downstream 22656 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003677 lncRNA downstream 184270 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00003678 lncRNA downstream 184359 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00005675 lncRNA downstream 267217 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00005817 lncRNA downstream 562080 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003664 mRNA upstream 29900 4924388 ~ 4934610 (+) True XLOC_001847
TCONS_00003662 mRNA upstream 53509 4874542 ~ 4911001 (+) False XLOC_001846
TCONS_00003663 mRNA upstream 53509 4875262 ~ 4911001 (+) True XLOC_001846
TCONS_00003661 mRNA upstream 133292 4807913 ~ 4831218 (+) True XLOC_001844
TCONS_00003660 mRNA upstream 155899 4806323 ~ 4808611 (+) False XLOC_001844
TCONS_00003669 mRNA downstream 22656 4987766 ~ 4996049 (+) True XLOC_001851
TCONS_00003670 mRNA downstream 60586 5025696 ~ 5037449 (+) True XLOC_001852
TCONS_00003671 mRNA downstream 95081 5060191 ~ 5090210 (+) False XLOC_001853
TCONS_00003672 mRNA downstream 95151 5060261 ~ 5090392 (+) True XLOC_001853
TCONS_00003673 mRNA downstream 170732 5135842 ~ 5144288 (+) False XLOC_001854
TCONS_00003658 other upstream 471152 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1555610 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1937987 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 2275829 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 2697153 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003668 other downstream 20940 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 170732 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 186239 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 779813 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 2118661 7083771 ~ 7210108 (+) False XLOC_001887

Expression Profile

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