RNA id: TCONS_00003668



Basic Information


Item Value
RNA id TCONS_00003668
length 525
RNA type processed_transcript
GC content 0.36
exon number 2
gene id XLOC_001850
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4986050 ~ 4987483 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ttatACCCTTTCAGGCTGAAATTAATttttagaaacaggaaaaatctgatatttggggaaaattatcatatggcgtaatcctgacttttttttagagagaccttcacatgcaaggcattctgggatgttgcagatttgcaacattggctcagtgtggtaattagacaCTGAcgactgaatatgatatgaaaaataattttttatgtacaacttttcaaacaatgtaacaaattgcttttcagtggcagaacaacaacaaaaacaatatgggatccaaatccaatatctcaaatcctcattgagttggtcatgtttccaagtcactttgtcatgtggtactccaagaaactttttttgtgtgtgtgtcatctggtGAGCAAGTGGGGAAACTGTTCGTTGCAaatggacaaccaagtcctgcagtggtacttctgagtaaaaaaactcataaaatatgcACCTAGAGTAATAAGGTAGTTAaatttaactgttgcaaatctgcaactcCTGCCTTGAAAGGGTTAA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133986

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00003667 lncRNA upstream 20940 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005815 lncRNA upstream 22750 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003665 lncRNA upstream 22750 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00005673 lncRNA upstream 175799 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005814 lncRNA upstream 644404 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005674 lncRNA downstream 283 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003677 lncRNA downstream 161897 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00003678 lncRNA downstream 161986 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00005675 lncRNA downstream 244844 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00005817 lncRNA downstream 539707 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003666 mRNA upstream 16842 4964463 ~ 4969208 (+) False XLOC_001849
TCONS_00003664 mRNA upstream 51440 4924388 ~ 4934610 (+) True XLOC_001847
TCONS_00003662 mRNA upstream 75049 4874542 ~ 4911001 (+) False XLOC_001846
TCONS_00003663 mRNA upstream 75049 4875262 ~ 4911001 (+) True XLOC_001846
TCONS_00003661 mRNA upstream 154832 4807913 ~ 4831218 (+) True XLOC_001844
TCONS_00003669 mRNA downstream 283 4987766 ~ 4996049 (+) True XLOC_001851
TCONS_00003670 mRNA downstream 38213 5025696 ~ 5037449 (+) True XLOC_001852
TCONS_00003671 mRNA downstream 72708 5060191 ~ 5090210 (+) False XLOC_001853
TCONS_00003672 mRNA downstream 72778 5060261 ~ 5090392 (+) True XLOC_001853
TCONS_00003673 mRNA downstream 148359 5135842 ~ 5144288 (+) False XLOC_001854
TCONS_00003658 other upstream 492692 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1577150 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1959527 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 2297369 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 2718693 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003675 other downstream 148359 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 163866 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 757440 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 2096288 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2585833 7573316 ~ 7578051 (+) True XLOC_001890

Expression Profile


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