RNA id: TCONS_00005674


Basic Information

Item Value
RNA id TCONS_00005674
length 379
lncRNA type sense_over
GC content 0.44
exon number 2
gene id XLOC_001851
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4987766 ~ 4996049 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTAATGTGCAAACTGTCTGGGAGGGGAAGCTCTGTTTGCAAATGAGCTCTCTGAAGTTTCATCCTGTTCTTTTGTACTTGTGTTGTAGCTCACGGGACCGAGACGCTTCCTCTAGAAAACATACCTTTCAAGCAATGGTTGCAATCTTAGCCTGAACTTTCGGAAACTACCAGAAGTGGGACATTTGAGTTTTTACAAAAGCACCAGTATGGCCGACTACAACACTGAATCAGCAGCTCCTCCTAGCAAACTCAACCAAGTCCAGGATCAAGTCAATGATGTTAAAGTGATTCTCAAAGACAACATCAACAAAGTGTTGGAGAGAGGAGAGAGATTAGATGACCTGATCGGCAAAACAGATGATCTACAAGCAACGG

Function

GO:

id name namespace
GO:0089709 L-histidine transmembrane transport biological_process
GO:0016485 protein processing biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0019866 organelle inner membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003667 lncRNA upstream 22656 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005815 lncRNA upstream 24466 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003665 lncRNA upstream 24466 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00005673 lncRNA upstream 177515 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005814 lncRNA upstream 646120 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00003677 lncRNA downstream 157342 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00003678 lncRNA downstream 157431 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00005675 lncRNA downstream 240289 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00005817 lncRNA downstream 535152 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA downstream 535152 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003666 mRNA upstream 18558 4964463 ~ 4969208 (+) False XLOC_001849
TCONS_00003664 mRNA upstream 53156 4924388 ~ 4934610 (+) True XLOC_001847
TCONS_00003662 mRNA upstream 76765 4874542 ~ 4911001 (+) False XLOC_001846
TCONS_00003663 mRNA upstream 76765 4875262 ~ 4911001 (+) True XLOC_001846
TCONS_00003661 mRNA upstream 156548 4807913 ~ 4831218 (+) True XLOC_001844
TCONS_00003670 mRNA downstream 33658 5025696 ~ 5037449 (+) True XLOC_001852
TCONS_00003671 mRNA downstream 68153 5060191 ~ 5090210 (+) False XLOC_001853
TCONS_00003672 mRNA downstream 68223 5060261 ~ 5090392 (+) True XLOC_001853
TCONS_00003673 mRNA downstream 143804 5135842 ~ 5144288 (+) False XLOC_001854
TCONS_00003674 mRNA downstream 143804 5135842 ~ 5147554 (+) False XLOC_001854
TCONS_00003668 other upstream 283 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 494408 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1578866 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 1961243 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 2299085 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003675 other downstream 143804 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 159311 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 752885 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 2091733 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2581278 7573316 ~ 7578051 (+) True XLOC_001890

Expression Profile

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