RNA id: TCONS_00003679



Basic Information


Item Value
RNA id TCONS_00003679
length 813
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_001855
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5149359 ~ 5156799 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ttttatttttgttgtttcttgTGTGTGATTGTCTTGATATGTCTACTTACAGCAGTTTGTCTATTTTAAACCTGTGGTTAAAGAGTTTTCTAACATTTCCCTGTTCATTTTCTTTACTTTAGAAAACCCAGAGAAAGGAAGGAAAGGGAATAAAGCCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGACCGGAGCAGAGTGGTTCCCTTTGAACCACGGTCAGAAGTCGACGATTTCGAGCACCTGCCTGTTCCAGGTCCTTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGATCCCCAGCTGTTGAGTATTCCGGGCCCCTCCAGGATCAATGCAGATCCGGCCCGTCCTGAGTCCTCGACGGCCCTCACAGGTCATGTTGACCCTGAGCTTGTGCGTCCGCCAGTCCAGATCTGTGAAGATCCTCGGCTAATCAGTGTCCATGGCCCCTCCAATATTAAGACAATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGGTGAGTCCTCCTGAATTTGGTTCATTTTATTTCTGCCATCTGTCATTTTTcatgctttgttgtttttagcttAAACATCAGACAGTGTCACTTGTTGTACTATTGGTTGTGTATTAATTATTAGCTGCAGCTCTGCTCATGGAGATGTTTCTGTTTGctttcttcattttagaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139562

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005674 lncRNA upstream 159311 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003667 lncRNA upstream 186239 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005815 lncRNA upstream 188049 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00003665 lncRNA upstream 188049 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00005673 lncRNA upstream 341098 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00005675 lncRNA downstream 79926 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00005817 lncRNA downstream 374789 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA downstream 374789 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003688 lncRNA downstream 377333 5529734 ~ 5543090 (+) True XLOC_001863
TCONS_00005676 lncRNA downstream 435559 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00003674 mRNA upstream 3795 5135842 ~ 5147554 (+) False XLOC_001854
TCONS_00003673 mRNA upstream 7061 5135842 ~ 5144288 (+) False XLOC_001854
TCONS_00003672 mRNA upstream 60957 5060261 ~ 5090392 (+) True XLOC_001853
TCONS_00003671 mRNA upstream 61139 5060191 ~ 5090210 (+) False XLOC_001853
TCONS_00003670 mRNA upstream 113900 5025696 ~ 5037449 (+) True XLOC_001852
TCONS_00003680 mRNA downstream 7074 5159475 ~ 5221537 (+) False XLOC_001856
TCONS_00003681 mRNA downstream 51131 5203532 ~ 5221537 (+) True XLOC_001856
TCONS_00003682 mRNA downstream 81926 5234327 ~ 5265160 (+) False XLOC_001858
TCONS_00003683 mRNA downstream 81943 5234344 ~ 5265151 (+) True XLOC_001858
TCONS_00003684 mRNA downstream 115653 5268054 ~ 5407509 (+) True XLOC_001859
TCONS_00003675 other upstream 3767 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 163866 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 657991 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1742449 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 2124826 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003693 other downstream 592522 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 1931370 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2420915 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 3190787 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 3710120 8862521 ~ 8868895 (+) True XLOC_001921

Expression Profile


//