RNA id: TCONS_00005675


Basic Information

Item Value
RNA id TCONS_00005675
length 488
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_001857
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5232327 ~ 5234250 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgataaataatggaccgAGCTGGagaagaatgaatgaacgaatgaattactATCGCTTATGGTAGCCTGCTTTGCAATTCCAAATTCGGTTGTGGTCGGTTTAAATGCCACAAGAACAAGTAGTCGCACTAATACCAAATTTACCAGGACAAAACAAGagtattttaaaagtttaagagctataaaagtaatttttgaatgtttttatacCATTCTCCTAATCAATATGAATGataTCTAAAGTGGTTGTTACATTTCAagacaacacaaaacaacagcaacaacggcaacacacacacacacacacacacacacacacacacacacaatactgcaTTTCCCCCATAACATTCTCCAGCAGCCTATATTAAATGTTCAGCTTACCAAACGGTATGCAACAGTACAAGAAATGTAACAAATGGTTTCTTTATAACCATAACGTAATGCTGGTTTGATGGTGACCAAGCAAATGACATCACATTCAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003678 lncRNA upstream 79926 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00003677 lncRNA upstream 80281 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00005674 lncRNA upstream 240289 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003667 lncRNA upstream 267217 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005815 lncRNA upstream 269027 4961815 ~ 4963300 (+) False XLOC_001848
TCONS_00005817 lncRNA downstream 292940 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA downstream 292940 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003688 lncRNA downstream 295484 5529734 ~ 5543090 (+) True XLOC_001863
TCONS_00005676 lncRNA downstream 353710 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00005818 lncRNA downstream 554157 5788407 ~ 5793526 (+) True XLOC_001867
TCONS_00003680 mRNA upstream 10790 5159475 ~ 5221537 (+) False XLOC_001856
TCONS_00003681 mRNA upstream 10790 5203532 ~ 5221537 (+) True XLOC_001856
TCONS_00003676 mRNA upstream 75528 5149359 ~ 5156799 (+) False XLOC_001855
TCONS_00003674 mRNA upstream 84773 5135842 ~ 5147554 (+) False XLOC_001854
TCONS_00003673 mRNA upstream 88039 5135842 ~ 5144288 (+) False XLOC_001854
TCONS_00003682 mRNA downstream 77 5234327 ~ 5265160 (+) False XLOC_001858
TCONS_00003683 mRNA downstream 94 5234344 ~ 5265151 (+) True XLOC_001858
TCONS_00003684 mRNA downstream 33804 5268054 ~ 5407509 (+) True XLOC_001859
TCONS_00003685 mRNA downstream 175258 5409508 ~ 5410985 (+) True XLOC_001860
TCONS_00003686 mRNA downstream 179974 5414224 ~ 5419256 (+) True XLOC_001861
TCONS_00003679 other upstream 79926 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 84745 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 244844 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 738969 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1823427 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003693 other downstream 510673 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 1849521 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2339066 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 3108938 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 3628271 8862521 ~ 8868895 (+) True XLOC_001921

Expression Profile

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