RNA id: TCONS_00003685


Basic Information

Item Value
RNA id TCONS_00003685
length 1478
RNA type mRNA
GC content 0.45
exon number 1
gene id XLOC_001860
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5409508 ~ 5410985 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcggaggtcgcatttcggtcgcATGCTTTCAGAGCATTTCTGAATGGATGAATCAAATAcgcggttttccaccaaggcaacccggagtgctgaaatataattggctaaactggcattgtgCGGGTTAAAAGAACATAAACAAAGACTGCGTTCCAGCACGGAAAACGCATTTTTAAaatcagaatatctgacttcagcattgtttttccagataaacaagtatgttcacttagcatgtttctgaaataactgcaaacatattatggtacttttatgctttagaagagtcaaaaacttacatacagcacctttaaatgagCACAAACGTTTAACATGTACTCTAAAAGTGAGCTTTGTGTGCTGGTTGATgttaaccaatgactgtaaagtAGGTGTTCTTAATCTCCCGCCACTTCCCAAGGAAGGCGGGACTGAAAAAATACATATTCTCTACTTTTTTTGGACAAATTTACACTTGCATACTGGCCCTCATCCTGCCTGCTGAGATGTCAACAGGTGCTTGTTGCTCCGCGCTTGACGACCTGGCTTGCGTTCGTGATTTACGGGATGCCTACCAGCTGAACGCGATGCCAACACGCCTCGCGAACACTGGCACGCGACGGAAAAGAGAATTTACGCCGGATGAGCTAAAGGACAGTAATTACTGGCTCAAGCGGAATCGTAATAACGAAGCGGCGAAAAAGTCTCGCCAGCGCAAGAGGATGGAGGAGCATCTTCTGGAGACGCGCGCCGTCGAGCTCCAGCGGGAAAACGACAAGCTAAAGGCTGCTCTTTCTGCAGTGCATCACCACCGCGCTGCTACAAATCATCCAGCTGGATTTTCTTTTGGACTCCCAAATGAATGTTATCCGTCCTTTCCAGGCACTTTGATTCAACATTGCCCGTTTTCTGGTTGTTGCAGGTGTAGtcaaacaaatcatttgaattcgGTTTTTGATTTGGTTTCATACCCCGTGCCAAATACCAGTCGGCGCACCAGTTTATTATATGGTTATAATCCTGTAAGAAGACACGGTGATGGCACGAATGCATGCACCTTCGGAGCTTACAGGAGGAATGCAAGTTTTGCGCATGGAATCGACTCTGGCCTGCCAGACTCCACAAGTGCACCGAACAACCAGACGCGTGGATGCAGCAGCCCTAAAACACTGCCCTTGGCACAGAATTACGCGCGGCAGACAGGAGCCACGCGTGAAGGCGCAATGCAAACAAACGGAGGGACCAAAAAGTCAGTTCTGCTTCCTCACAAACTGCGCTACAAAGTTGATAACGCACGCTTTGCGTCCGCGTACTTTTCATCATAATGAAACCATGCAAGGAAACCGTGCGTTTATTTTTCCTCTTTACAAATGTGCTCCTGATTGTATTGCTTAACTGCGTTTTTATTCAAGAAATCACTTAACTTGCACTGTGAATATTTTAGTTATAATACCTCTTAAATAAAAAGGTATTCCGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154208

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005675 lncRNA upstream 175258 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00003678 lncRNA upstream 257107 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00003677 lncRNA upstream 257462 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00005674 lncRNA upstream 417470 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003667 lncRNA upstream 444398 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005817 lncRNA downstream 116205 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA downstream 116205 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003688 lncRNA downstream 118749 5529734 ~ 5543090 (+) True XLOC_001863
TCONS_00005676 lncRNA downstream 176975 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00005818 lncRNA downstream 377422 5788407 ~ 5793526 (+) True XLOC_001867
TCONS_00003684 mRNA upstream 1999 5268054 ~ 5407509 (+) True XLOC_001859
TCONS_00003682 mRNA upstream 144348 5234327 ~ 5265160 (+) False XLOC_001858
TCONS_00003683 mRNA upstream 144357 5234344 ~ 5265151 (+) True XLOC_001858
TCONS_00003680 mRNA upstream 187971 5159475 ~ 5221537 (+) False XLOC_001856
TCONS_00003681 mRNA upstream 187971 5203532 ~ 5221537 (+) True XLOC_001856
TCONS_00003686 mRNA downstream 3239 5414224 ~ 5419256 (+) True XLOC_001861
TCONS_00003687 mRNA downstream 11590 5422575 ~ 5475690 (+) True XLOC_001862
TCONS_00003689 mRNA downstream 233371 5644356 ~ 5655109 (+) False XLOC_001865
TCONS_00003690 mRNA downstream 234902 5645887 ~ 5655109 (+) True XLOC_001865
TCONS_00003691 mRNA downstream 278525 5689510 ~ 5767172 (+) False XLOC_001866
TCONS_00003679 other upstream 257107 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 261926 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 422025 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 916150 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 2000608 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003693 other downstream 333938 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 1672786 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2162331 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 2932203 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 3451536 8862521 ~ 8868895 (+) True XLOC_001921

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_01975851_01976768.mRNA True 1702 mRNA 0.41 1 CI01000304 1975666 ~ 1977367 (-)