RNA id: TCONS_00003686


Basic Information

Item Value
RNA id TCONS_00003686
length 1957
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_001861
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5414224 ~ 5419256 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCCACGAACAGCAGCCACTCCAGCAGGAAAACGCAAAGGAGAAACACAAGTATCATTTCCAGATGGGATTTTATTGCAGCTGATGAAACACTTCTTAATGTTTTCACGCGCACTATTTATTCCGGATCTCCATCTAAGTGGGGTTTTGGTTACTAGAGATAACCACTGAATTCTCTGAAACTGACTTCACGAAGAGGATACACATGACTTTTATTGCACTTGGTCTACGATGAGATGTTTATTTAAAACCAGAGTCGACTAAAGAGCTTATGCAGTCTTGATGACATCATTGTGTAATATGCAAGCCATTAAGAAAGAGCCCCCATGCAGTGGGCCCTACGGTGGAGAGGACGCCTTGGTGCTGGCTGTAGCTTTGCAAGGGACAGACAGGGACCTGATTAACCACAAACTGTCCACCCTACCTTTCAAGTCCAAGTCCACCAGCTGTCGCCGGAAACGTGAGTTCATACCCGATGAGAAGAAAGACAACCTATATTGGGAGAGAAGGCGCAAGAACAATGAAGCAGCCAAGCGCTCCAGGGAAAAGCGCAGACTAAATGACATGGTTCTGGAGAACAAGCTTATGGCCCTTGGGGAAGAGAACGCATCGCTGAAAGCTGAGCTTTTGTCACTTAAACTCAGGTTTGGTCTAGTGAGCTCAGCCGCTTATGCTCAGGAGGTGCAGAACATCTCCACTTCCACTGCTGCGCTCTACCAGGACTTTATGTCACCCAGTGCCACCAAGGATTCCTACCCAAGTGATCTGGAGCCAACGCGTTTGACCAGCAGCTGCATTTCGGTCATCAAGCACTCACCTCACAGCGCCTTGTCCGACGGATCTGACTCTAGCACAGTTACCCAGGGAAGCCCCCTAATAAATATTTCTAGATCCCCTGACAGCATCAAACAAGAACCCCTGGAAACTGGCAGATACTCCAAAGAGAGGATCAGTCCTTATGAACTCTACAGGAACTACCTTAGTAGTCCTTTTCCTGGGAACTTCTCCCAGCCATCTCCGTTCTTACAAATCGCTAGATCGTCTAGCAATTCGCCACGAACATCTGATGGCGACGATGGCGCCGTAAGCAAGTCCTCCGATAATGAGGATGAACAGCAGGTCCCAAAGGGTCCAGTTCCAACCAGGTCTGATTCACAGAGCGTGATTGTGTCAACTCTCAAAGTGCCAGATTCCAGTGCCTCAGCTTTACCTCACAAGTTGAGGATCAAAGCCCGGGCCATCCAGATTAAAGTGGAGGCAATCGATCCCGATTATGAATCATCTGGAAAGTCCTCCTTTCCCGTTGACATGTCTGCAAGAAGACGCTACCAAATGAGTCAGTGTGCTACACCCGAGTACATTCAATCATCTCTTAGCCCGATGTCCTTCCAGATGACCAATGTTCAGGACTGGAATCACCGACCGAAGGAATGGCACGAGGATCACCAGGAGGCCCTAACTAGCTACAAATACCGGCAATGTCCAGACTCACCAAGACCTGTGCCTAACAAACTCATCGTTGACCTTGAAAATGACTCGTATGCCAACTCTGAATCTGAGAATTTGTACTTGAAGCAGGGCATTGAGGATTTGTCGGCAGAAGTGGCCTGCTTGAAAAGACTGATTTCAAAACAGCAGGGGTCTGTTATTGAGTCCACGAAAAGCACTACTGAAATTGACTCCTCATGAAAAGGATGTTTCTGAAACGGAGTTCCCTCAATTTGCACAACGCCTGTTTTCCACTGTGTTCGCTACTGCACTGTGCGGTTGTTATGGTGTCAAAAACCTGCACTTCATTGAGAAGAATGGTGTTTTGTGCACTTACTGTCGTAGTTTGGCGTGTCTTCTTGATGACTCCAGTTGTAGCTCAAAAGCCAAAAATTGGGCTGCTGTTAATGTTAACTTCTCGAATTGTATTGTACATtgtatgttttcttttgtttacaaTAAATGCAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048511 rhythmic process biological_process
GO:0006955 immune response biological_process
GO:0061515 myeloid cell development biological_process
GO:0007623 circadian rhythm biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040822-28 Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within heart development and myeloid cell development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in brain; margin; retina; and tail bud. Orthologous to human NFIL3 (nuclear factor, interleukin 3 regulated).

Ensembl:

ensembl_id ENSDART00000138821

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005675 lncRNA upstream 179974 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00003678 lncRNA upstream 261823 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00003677 lncRNA upstream 262178 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00005674 lncRNA upstream 422186 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003667 lncRNA upstream 449114 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005817 lncRNA downstream 107934 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA downstream 107934 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003688 lncRNA downstream 110478 5529734 ~ 5543090 (+) True XLOC_001863
TCONS_00005676 lncRNA downstream 168704 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00005818 lncRNA downstream 369151 5788407 ~ 5793526 (+) True XLOC_001867
TCONS_00003685 mRNA upstream 3239 5409508 ~ 5410985 (+) True XLOC_001860
TCONS_00003684 mRNA upstream 6715 5268054 ~ 5407509 (+) True XLOC_001859
TCONS_00003682 mRNA upstream 149064 5234327 ~ 5265160 (+) False XLOC_001858
TCONS_00003683 mRNA upstream 149073 5234344 ~ 5265151 (+) True XLOC_001858
TCONS_00003680 mRNA upstream 192687 5159475 ~ 5221537 (+) False XLOC_001856
TCONS_00003687 mRNA downstream 3319 5422575 ~ 5475690 (+) True XLOC_001862
TCONS_00003689 mRNA downstream 225100 5644356 ~ 5655109 (+) False XLOC_001865
TCONS_00003690 mRNA downstream 226631 5645887 ~ 5655109 (+) True XLOC_001865
TCONS_00003691 mRNA downstream 270254 5689510 ~ 5767172 (+) False XLOC_001866
TCONS_00003692 mRNA downstream 270269 5689525 ~ 5787286 (+) False XLOC_001866
TCONS_00003679 other upstream 261823 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 266642 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 426741 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 920866 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 2005324 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003693 other downstream 325667 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 1664515 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2154060 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 2923932 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 3443265 8862521 ~ 8868895 (+) True XLOC_001921

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_01970027_01971430.mRNA True 1404 mRNA 0.51 1 CI01000304 1970027 ~ 1971430 (-)