Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003695 |
| length | 1797 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 13 |
| gene id | XLOC_001866 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 5689510 ~ 5787286 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0097711 | ciliary basal body-plasma membrane docking | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0030033 | microvillus assembly | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016715 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0004504 | peptidylglycine monooxygenase activity | molecular_function |
| GO:0005507 | copper ion binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090313-384 | Enables peptidylglycine monooxygenase activity. Acts upstream of or within ciliary basal body-plasma membrane docking and microvillus assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular region. Is expressed in floor plate; gut; otic vesicle; and ventricular system. Orthologous to human PAM (peptidylglycine alpha-amidating monooxygenase). |
| ensembl_id | ENSDART00000184734 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005676 | lncRNA | upstream | 156711 | 5587960 ~ 5588230 (+) | True | XLOC_001864 |
| TCONS_00005817 | lncRNA | upstream | 201800 | 5527190 ~ 5543141 (+) | False | XLOC_001863 |
| TCONS_00005816 | lncRNA | upstream | 201800 | 5527190 ~ 5543141 (+) | False | XLOC_001863 |
| TCONS_00003688 | lncRNA | upstream | 201851 | 5529734 ~ 5543090 (+) | True | XLOC_001863 |
| TCONS_00005675 | lncRNA | upstream | 510691 | 5232327 ~ 5234250 (+) | True | XLOC_001857 |
| TCONS_00005818 | lncRNA | downstream | 1740 | 5788407 ~ 5793526 (+) | True | XLOC_001867 |
| TCONS_00005677 | lncRNA | downstream | 94033 | 5880700 ~ 5881233 (+) | True | XLOC_001868 |
| TCONS_00005819 | lncRNA | downstream | 329627 | 6116294 ~ 6116936 (+) | True | XLOC_001871 |
| TCONS_00003709 | lncRNA | downstream | 553801 | 6340468 ~ 6350276 (+) | False | XLOC_001873 |
| TCONS_00005820 | lncRNA | downstream | 841952 | 6628619 ~ 6628997 (+) | True | XLOC_001877 |
| TCONS_00003689 | mRNA | upstream | 89832 | 5644356 ~ 5655109 (+) | False | XLOC_001865 |
| TCONS_00003690 | mRNA | upstream | 89832 | 5645887 ~ 5655109 (+) | True | XLOC_001865 |
| TCONS_00003687 | mRNA | upstream | 269251 | 5422575 ~ 5475690 (+) | True | XLOC_001862 |
| TCONS_00003686 | mRNA | upstream | 325685 | 5414224 ~ 5419256 (+) | True | XLOC_001861 |
| TCONS_00003685 | mRNA | upstream | 333956 | 5409508 ~ 5410985 (+) | True | XLOC_001860 |
| TCONS_00003696 | mRNA | downstream | 168120 | 5954787 ~ 6004863 (+) | False | XLOC_001869 |
| TCONS_00003698 | mRNA | downstream | 168133 | 5954800 ~ 6004759 (+) | False | XLOC_001869 |
| TCONS_00003697 | mRNA | downstream | 168133 | 5954800 ~ 6004759 (+) | True | XLOC_001869 |
| TCONS_00003699 | mRNA | downstream | 223903 | 6010570 ~ 6032875 (+) | False | XLOC_001870 |
| TCONS_00003700 | mRNA | downstream | 223907 | 6010574 ~ 6023725 (+) | False | XLOC_001870 |
| TCONS_00003679 | other | upstream | 592540 | 5151349 ~ 5152401 (+) | True | XLOC_001855 |
| TCONS_00003675 | other | upstream | 597359 | 5135842 ~ 5147582 (+) | True | XLOC_001854 |
| TCONS_00003668 | other | upstream | 757458 | 4986050 ~ 4987483 (+) | True | XLOC_001850 |
| TCONS_00003658 | other | upstream | 1251583 | 4493277 ~ 4493358 (+) | True | XLOC_001842 |
| TCONS_00003646 | other | upstream | 2336041 | 3408783 ~ 3408900 (+) | True | XLOC_001830 |
| TCONS_00003731 | other | downstream | 1297104 | 7083771 ~ 7210108 (+) | False | XLOC_001887 |
| TCONS_00003739 | other | downstream | 1786649 | 7573316 ~ 7578051 (+) | True | XLOC_001890 |
| TCONS_00003759 | other | downstream | 2556521 | 8343188 ~ 8343305 (+) | True | XLOC_001906 |
| TCONS_00003778 | other | downstream | 3075854 | 8862521 ~ 8868895 (+) | True | XLOC_001921 |
| TCONS_00003779 | other | downstream | 3082801 | 8869468 ~ 8880126 (+) | False | XLOC_001922 |
