Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003703 |
| length | 643 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_001870 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 6010570 ~ 6034397 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0006084 | acetyl-CoA metabolic process | biological_process |
| GO:0016126 | sterol biosynthetic process | biological_process |
| GO:0010142 | farnesyl diphosphate biosynthetic process, mevalonate pathway | biological_process |
| GO:0008202 | steroid metabolic process | biological_process |
| GO:0048821 | erythrocyte development | biological_process |
| GO:0006694 | steroid biosynthetic process | biological_process |
| GO:0014003 | oligodendrocyte development | biological_process |
| GO:0014033 | neural crest cell differentiation | biological_process |
| GO:0008299 | isoprenoid biosynthetic process | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0004421 | hydroxymethylglutaryl-CoA synthase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1042 | Predicted to enable hydroxymethylglutaryl-CoA synthase activity. Acts upstream of or within animal organ development and oligodendrocyte development. Is expressed in several structures, including digestive system; immature eye; nervous system; pectoral fin musculature; and yolk syncytial layer. Orthologous to several human genes including HMGCS1 (3-hydroxy-3-methylglutaryl-CoA synthase 1). |
| ensembl_id | ENSDART00000162628 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005677 | lncRNA | upstream | 142956 | 5880700 ~ 5881233 (+) | True | XLOC_001868 |
| TCONS_00005818 | lncRNA | upstream | 230663 | 5788407 ~ 5793526 (+) | True | XLOC_001867 |
| TCONS_00005676 | lncRNA | upstream | 435959 | 5587960 ~ 5588230 (+) | True | XLOC_001864 |
| TCONS_00005816 | lncRNA | upstream | 481048 | 5527190 ~ 5543141 (+) | False | XLOC_001863 |
| TCONS_00005819 | lncRNA | downstream | 83200 | 6116294 ~ 6116936 (+) | True | XLOC_001871 |
| TCONS_00003709 | lncRNA | downstream | 307374 | 6340468 ~ 6350276 (+) | False | XLOC_001873 |
| TCONS_00005820 | lncRNA | downstream | 595525 | 6628619 ~ 6628997 (+) | True | XLOC_001877 |
| TCONS_00005821 | lncRNA | downstream | 611303 | 6644397 ~ 6644775 (+) | True | XLOC_001878 |
| TCONS_00005822 | lncRNA | downstream | 651324 | 6684418 ~ 6684796 (+) | True | XLOC_001880 |
| TCONS_00003700 | mRNA | upstream | 464 | 6010574 ~ 6023725 (+) | False | XLOC_001870 |
| TCONS_00003702 | mRNA | upstream | 2156 | 6013162 ~ 6022033 (+) | False | XLOC_001870 |
| TCONS_00003696 | mRNA | upstream | 19326 | 5954787 ~ 6004863 (+) | False | XLOC_001869 |
| TCONS_00003698 | mRNA | upstream | 19430 | 5954800 ~ 6004759 (+) | False | XLOC_001869 |
| TCONS_00003697 | mRNA | upstream | 19430 | 5954800 ~ 6004759 (+) | True | XLOC_001869 |
| TCONS_00003704 | mRNA | downstream | 88464 | 6121558 ~ 6313106 (+) | False | XLOC_001872 |
| TCONS_00003705 | mRNA | downstream | 88464 | 6121558 ~ 6313905 (+) | True | XLOC_001872 |
| TCONS_00003706 | mRNA | downstream | 285133 | 6318227 ~ 6363374 (+) | False | XLOC_001873 |
| TCONS_00003707 | mRNA | downstream | 285163 | 6318257 ~ 6359743 (+) | False | XLOC_001873 |
| TCONS_00003708 | mRNA | downstream | 285254 | 6318348 ~ 6375394 (+) | False | XLOC_001873 |
| TCONS_00003693 | other | upstream | 254577 | 5744923 ~ 5769612 (+) | False | XLOC_001866 |
| TCONS_00003679 | other | upstream | 871788 | 5151349 ~ 5152401 (+) | True | XLOC_001855 |
| TCONS_00003675 | other | upstream | 876607 | 5135842 ~ 5147582 (+) | True | XLOC_001854 |
| TCONS_00003668 | other | upstream | 1036706 | 4986050 ~ 4987483 (+) | True | XLOC_001850 |
| TCONS_00003658 | other | upstream | 1530831 | 4493277 ~ 4493358 (+) | True | XLOC_001842 |
| TCONS_00003731 | other | downstream | 1050677 | 7083771 ~ 7210108 (+) | False | XLOC_001887 |
| TCONS_00003739 | other | downstream | 1540222 | 7573316 ~ 7578051 (+) | True | XLOC_001890 |
| TCONS_00003759 | other | downstream | 2310094 | 8343188 ~ 8343305 (+) | True | XLOC_001906 |
| TCONS_00003778 | other | downstream | 2829427 | 8862521 ~ 8868895 (+) | True | XLOC_001921 |
| TCONS_00003779 | other | downstream | 2836374 | 8869468 ~ 8880126 (+) | False | XLOC_001922 |
