RNA id: TCONS_00003731


Basic Information

Item Value
RNA id TCONS_00003731
length 886
RNA type processed_transcript
GC content 0.50
exon number 8
gene id XLOC_001887
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7029664 ~ 7233955 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATGAGCCGGACATTAAACAGCGCTTTATTTTCTTACTTTTATCGGCAAGCTTTATACTTTTAACGGGGCTTTGGAGTTCGCGTGTCTCTGTTGGAATGTTAATGAAAACGCTGTGTGAGAGTTGGAGGTTTGCGCTCTGGACGCGTACGTGAAGTCTGCAGCGATGCGGGGCTGAAGGACGTGCTGTCGGACTGGGACTCAGACATGGATGTTGTGGAATGTCTTAAGGACACAGATGTTCTCCACAATGGCAGCCGGAGTGATCAGGAAGCTGCCCGACGTCTGGCCAGACGGCTCTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCCAAACATCTGGGCAAGAATAATGACTTCAGTAAGATGGTTGCAGAAGAGTACCTCACGTTCTTTGAGTTTACAGACCAGACATTGGACCAATCGCTCAGATGTTTTCTGAAAGCATTCTCGCTAATGGGCGAGACTCAGGAGAGGGAGCGGGTGTTAATTCATTTCTCTAATCGGTACTATCAGTGTAATCCCACCATCATCACCGCACAAGATGGAGTTCATTGCCTTACCTGTGCACTAATGCTGCTCAACACAGACCTTCATGGCCCTAATATTGGGAAGAAGATGACGTGCCAGGAATTCATCAATAACCTGGACGGTCTCAACGGTGGACAAGATTTCCCACGGGAGCTGCTGAAGTCATTGTATAACTCCATCAAGAACGAGAAGCTGGAATGGGCTGTaGATGGAGATGAGCTGAAGAAGTCTCTGTCTGAACTGGCGGATAAGAACCATCACTCTCACAGTAAGAGCATCAGTCGCATCAGCAGCGGCAGTAACCCCTTCCTAGACATCGCACACGACCCCAATGCTGCCGTCTACAAAACTGG

Function

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8195 Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3).

Ensembl:

ensembl_id ENSDART00000157987

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005823 lncRNA upstream 328005 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 398975 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 438996 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 454774 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00003709 lncRNA upstream 733495 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005678 lncRNA downstream 598603 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 633298 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 660501 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 768409 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005679 lncRNA downstream 777917 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00003728 mRNA upstream 139364 6907715 ~ 6944407 (+) True XLOC_001886
TCONS_00003723 mRNA upstream 178197 6884137 ~ 6905574 (+) False XLOC_001885
TCONS_00003724 mRNA upstream 178197 6884152 ~ 6905574 (+) False XLOC_001885
TCONS_00003722 mRNA upstream 178515 6884123 ~ 6905256 (+) False XLOC_001885
TCONS_00003727 mRNA upstream 178837 6884627 ~ 6904934 (+) False XLOC_001885
TCONS_00003735 mRNA downstream 45587 7255695 ~ 7264766 (+) False XLOC_001888
TCONS_00003736 mRNA downstream 45676 7255784 ~ 7264746 (+) True XLOC_001888
TCONS_00003737 mRNA downstream 353647 7563755 ~ 7565074 (+) False XLOC_001889
TCONS_00003738 mRNA downstream 353998 7564106 ~ 7565071 (+) True XLOC_001889
TCONS_00003740 mRNA downstream 375820 7585928 ~ 7588878 (+) True XLOC_001891
TCONS_00003693 other upstream 1314159 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 1931370 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 1936189 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 2096288 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 2590413 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003739 other downstream 363208 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 1133080 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1652413 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1659360 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 2136288 9346396 ~ 9348506 (+) False XLOC_001931

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00010641 True 645 mRNA 0.53 6 CM030129.1 37960752 ~ 37971680 (+)