RNA id: TCONS_00003737


Basic Information

Item Value
RNA id TCONS_00003737
length 1320
RNA type mRNA
GC content 0.59
exon number 1
gene id XLOC_001889
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7563755 ~ 7565074 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCTGTGTGCTGGAGGGAGGGGGGATTGGGTCATTGAGTTCATTCGCACTACAGCAGCGGCGCCCTCCATAGAGATccgctgtctctctctctcactctcactccAGCTGGCAAGAATATGTGTCAGATGGATGGTGAGGCGAAAAACAAGATCTTTTAAAATATGGTGCAAACGGTACGTGCCTCCGCGCTTCGCTTGACCTTTCATCAGGACAAAGGAAGTCGATGAGCCGTTTTAAGCGGAGCCGCTGCTGCTGCCATTTTCGGGTCAATCGAGGAGACTCGCCGGAGCTTGAGCTGTCGATAAGCGGAATAATACAGAGCCGAGAGATGGAGCGCCGTGAATGATTATGGCCGATAGTCACCGGAGGGCAACGGATAGAGGCAGAGGCAGAATGACATCAGGATACTCGCAGCAGTTTGTCAGCAGCAAAGCGTCAGACATTCAGGAGCTCGCGTCCAAGCGCGTGGACATCCAAAAGAAGCGCTTCTACCTGGACGTGAAGCAGAGCACCCGCGGCCGCTTCCTGAAGATCGCCGAGGTGTGGATCGGCCGTGGGAGACACGACAACATCCGCAAGAGCAAACTTACGCTCTCCATGTCCATGGCACCCGATCTGCGCTACTGCCTGGGAGACTTCATCGATTATTACGCGCACATCGGGCTCCGAGGATGCCAGGCGGCGGAACGCCGGCCGGAGGAGCAGAGCAACGGCCAGGGCCGCGCGCCGGACCCTCGCCGGAGAGCTGAGCAGGCGGCGTCACCCAACGGCTCCGGTGCGTCCGAAGAGCAGACGCACCGGGTGCTGAAGAGCGAGTTCATCGAGCGGGACAACAGGAAGTACTACCTGGACCTGAAGGAGAACCAGCGCGGACGGTTTCTGCGCATCAGGCAGACCGTCACCCGAGGACACGGGAGCATGGGCTACTACGGCCAGGGCATCGAGCAGACCATCGTGCTGCCCGCGCAAGGGCTcatcgagttccgagacgcgctGTCTCAGCTGATCGACGACTACGGCGACGACGAGCCCGAGCGGGCCTGCGCGCGGAACCACGATGAGTCTCCAGAGCTCCCCGAGGCGGCGTCGTTCCGCGTCGACAACAAACGCTTTTACTTCGACGTGGGCTCAAACCGGTTCGGCGTGTTCCTGAAGATCAGCGAGGTCCGGCAGCCCTACAGGAACACCATCACCGTTCCTCTGAAAGCCTGGGCGCGATTCGGCGAGAACTTCATGAGGTACGAAGAGGAGATGCGACACATCTTCAGCTGCCATAAAGAGAAGAGGACAGACACGGAGGAGCAGGAGGATTGACGC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0032422 purine-rich negative regulatory element binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-070702-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURG (purine rich element binding protein G).

Ensembl:

ensembl_id ENSDART00000165877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003730 lncRNA upstream 461001 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005823 lncRNA upstream 807989 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 878959 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 918980 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 934758 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00005678 lncRNA downstream 243637 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 278332 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 305535 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 413443 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005679 lncRNA downstream 422951 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00003735 mRNA upstream 298989 7255695 ~ 7264766 (+) False XLOC_001888
TCONS_00003736 mRNA upstream 299009 7255784 ~ 7264746 (+) True XLOC_001888
TCONS_00003729 mRNA upstream 329800 7029664 ~ 7233955 (+) False XLOC_001887
TCONS_00003734 mRNA upstream 332374 7182423 ~ 7231381 (+) True XLOC_001887
TCONS_00003733 mRNA upstream 341954 7182168 ~ 7221801 (+) False XLOC_001887
TCONS_00003740 mRNA downstream 20854 7585928 ~ 7588878 (+) True XLOC_001891
TCONS_00003741 mRNA downstream 28111 7593185 ~ 7617748 (+) False XLOC_001892
TCONS_00003742 mRNA downstream 28122 7593196 ~ 7607227 (+) False XLOC_001892
TCONS_00003743 mRNA downstream 28155 7593229 ~ 7617739 (+) True XLOC_001892
TCONS_00003744 mRNA downstream 71737 7636811 ~ 7640797 (+) True XLOC_001893
TCONS_00003731 other upstream 353647 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 1794143 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 2411354 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 2416173 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 2576272 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003739 other downstream 8242 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 778114 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1297447 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1304394 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 1781322 9346396 ~ 9348506 (+) False XLOC_001931

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_00877256_00878179.mRNA True 2046 mRNA 0.49 1 CI01000304 876134 ~ 878179 (-)
bowfin (Amia calva) AMCG00010650 True 1053 mRNA 0.67 1 CM030129.1 38277317 ~ 38278369 (+)