RNA id: TCONS_00003740


Basic Information

Item Value
RNA id TCONS_00003740
length 777
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_001891
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7585928 ~ 7588878 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTAAGGTTCTTGTTTGGCAAGACATGAATCATGGTGCACCAAGTGAGGCTCTTGAGACATATAAGAATTCAAACCCACAGATCATTTTTGGGGTGACAGAGTCAGGTGTTACTCTTGTAAACAAAGTGGAGCACCTTCCTCCATCCACAGATAGACAGACTCCACAAAAGATTGAAGTTGCTAGAAAACGCAAATGTTTACAGTTATGGATGTCCTCTGAACCCAGTGTGTCAAAGAGCATAAAGTCTAGCAAGGAGCTTGCTTACAAAATGGCTAAAAGGAGGGTGACTCATCCACCTGTAACACATTGTGACGTGAATGATAAAGGCCCCCTTTTCCAAACAACTCCAGCCACCCATCTTGAGGAGCTGAGCCCTTACTACCCACTCCCTCGCAGAATGGATCCACAGTGGGGAATGGTTGGACGTGATGCTGTAGACTGGAAGACACCTAACACAGTCCCCCCCTCGCCTTCAACGTCTCATGCTCACTCCGAAATACACTCTCGTCTTCTGTCTAAAAGACGAAGGGCTGTTTCACATTCTTCAGACAGGAGATCTTTAGCAGACATACAAAGACCTCAATGGCCTTCGGTCTCAGATTCCCAAGCAACTTTACGAGGAGATTCTTGTGCTTCACGTTCAGCATTTGAGAGCGTTAAATATCAACAAAATAGCACTGCAGCGCATTGTTCTATGCTCTCACAACAGCAAGTAAACCAGTTCAGTTTAGCCATGACACAACCTTATAATTTACCAAACTGTAATGTAAATCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166686

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003730 lncRNA upstream 483174 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005823 lncRNA upstream 830162 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 901132 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 941153 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 956931 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00005678 lncRNA downstream 219833 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 254528 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 281731 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 389639 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005679 lncRNA downstream 399147 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00003737 mRNA upstream 20854 7563755 ~ 7565074 (+) False XLOC_001889
TCONS_00003738 mRNA upstream 20857 7564106 ~ 7565071 (+) True XLOC_001889
TCONS_00003735 mRNA upstream 321162 7255695 ~ 7264766 (+) False XLOC_001888
TCONS_00003736 mRNA upstream 321182 7255784 ~ 7264746 (+) True XLOC_001888
TCONS_00003729 mRNA upstream 351973 7029664 ~ 7233955 (+) False XLOC_001887
TCONS_00003741 mRNA downstream 4307 7593185 ~ 7617748 (+) False XLOC_001892
TCONS_00003742 mRNA downstream 4318 7593196 ~ 7607227 (+) False XLOC_001892
TCONS_00003743 mRNA downstream 4351 7593229 ~ 7617739 (+) True XLOC_001892
TCONS_00003744 mRNA downstream 47933 7636811 ~ 7640797 (+) True XLOC_001893
TCONS_00003745 mRNA downstream 82382 7671260 ~ 7672949 (+) True XLOC_001894
TCONS_00003739 other upstream 7877 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 375820 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 1816316 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 2433527 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 2438346 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003759 other downstream 754310 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1273643 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1280590 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 1757518 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 2136896 9725774 ~ 9725891 (+) True XLOC_001937

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_00862451_00870277.mRNA True 8930 mRNA 0.41 8 CI01000304 862153 ~ 872429 (-)