RNA id: TCONS_00003741


Basic Information

Item Value
RNA id TCONS_00003741
length 2020
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_001892
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7593185 ~ 7617748 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCATGCCTTTCTGATGACGTCAGGGGCGGCGAATGCAGCGGCCATTACACAGCGCGTTTAAGAGGAAGGTCGGAAGCGCGGCGAGTCAACGAAAAAAATTACTAACGACAGGTAGTGGATCCCGTCAAACGACAGAAATCGGTTACCGCCAGCTGAAGATAAACACCACCGGCGATACGACGTTTCGTGTTTAATGAGCTGATAACCGAGTGTAAGAGCAGTGGTGTGTCGCGGCGGCCCAGCGCAGCGCGTGAGTTGCTAGTGTTACATTAAACTGGAGTTCAGTCATCGAGCGTTCATTGCTCATTTAATTACCGAAGAATCTGTTAAGAACACAACAGAACATTGCCGGTGATGGATGATAAAGCGTTTACGAAAGAATTAGACCAATGGGTCGAACAGCTGAACGAGTGCAAACAGCTGACCGAGAACCAAGTGAGAACGCTCTGCGAGAAGGCTAAAGAGATTCTTACTAAGGAGTCCAATGTACAAGAGGTGCGTTGTCCCGTTACGGTGTGCGGAGATGTGCACGGCCAGTTTCATGACCTAATGGAGCTCTTCAGAATTGGAGGGAAGTCACCTGACACCAACTATCTGTTTATGGGTGACTATGTAGACAGAGGGTATTACTCAGTGGAAACAGTAACACTTCTTGTTGCACTAAAGgttcGCTATCCAGAACGCATTACGATATTGCGGGGAAACCACGAGAGCAGACAGATCACACAAGTGTATGGTTTCTATGACGAGTGCTTGAGGAAATATGGCAACGCAAATGTCTGGAAATACTTCACAGATCTTTTTGATTACCTTCCCCTCACAGCCCTGGTGGATGGCCAGATCTTCTGTCTGCATGGTGGGCTCTCTCCGTCCATAGACACGCTGGATCACATTCGTGCACTGGATCGTCTGCAGGAGGTGCCGCATGAGggacCAATGTGTGATCTGCTGTGGTCAGACCCTGATGATCGCGGTGGCTGGGGAATCTCTCCACGAGGAGCCGGTTACACCTTTGGGCAGGACATTTCAGAGACCTTCAACCACGCTAATGGCCTTACACTGGTGTCCCGTGCTCATCAGCTGGTCATGGAGgggTACAACTGGTGTCATGATAGGAATGTCGTCACTATCTTCAGTGCGCCAAACTACTGCTATCGCTGTGGCAACCAGGCAGCCATTATGGAACTGGATGATACTCTTAAATATTCGTTCCTTCAATTTGATCCTGCTCCTCGACGTGGAGAGCCTCACGTCACCCGCCGCACCCCTGACTACTTCCTATAAGCGAGCACTGGCCTGCCGTGAGAGACCTCTGATGACAAATCCAAACATGTATACATCTATTCATCTATTGTGTATATAAGACGGGGGATATGTTCTGATACAACAACACTAATACGGACCAAAATGTGCCATACAAGCATCTAATGCCCAAATCAGATCGCTCTGTCTCAGTACCGCTACAAAGTGTCTCGTTTTAGCCTCTAGTGCAAATTGCCTGCTGTATACAATGAATAGAGATGTTCCCTTCGTTCTtgaattgtaaattaaaaaaagaaacaaaaaaacaaaacaaaaaaaaaaaaatgttaagtgaATAGCTTTCTCTCACAGTATCACAGGAATAAAACGTCCTTTAAGTTGGCAATGCCAggcatgtgaaaaaaaaaaaaacggtaacaTTTTTATACAAGTGCACAAGCTGACATCCTTTCCTGTAtcttcaccaaaaaataaataaaaataaaatgaaaacaaaaatgctaTTGGGAAGGAATGTTGAAAGCAAAAGACGTGCCTCTTCCGTTTTGggagtgtacacacacacacacacacaccacacgcgcatacatacacatacatatatggaCTTTATCTGACTGTCCCACTTTCTCTACTCTTtcccattttcttttcttttgtgtttccTGTCTTCTGTGTATTTGTCAATAAGTGATTAGACTCTTCTTTGGTGTATTTCAACTAATAAAGAACTTTTAATCGCAAGCTACTCCCAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2487 Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Orthologous to human PPP2CB (protein phosphatase 2 catalytic subunit beta).

Ensembl:

ensembl_id ENSDART00000162617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003730 lncRNA upstream 490431 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005823 lncRNA upstream 837419 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 908389 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 948410 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 964188 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00005678 lncRNA downstream 190963 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 225658 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 252861 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 360769 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005679 lncRNA downstream 370277 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00003740 mRNA upstream 4307 7585928 ~ 7588878 (+) True XLOC_001891
TCONS_00003737 mRNA upstream 28111 7563755 ~ 7565074 (+) False XLOC_001889
TCONS_00003738 mRNA upstream 28114 7564106 ~ 7565071 (+) True XLOC_001889
TCONS_00003735 mRNA upstream 328419 7255695 ~ 7264766 (+) False XLOC_001888
TCONS_00003736 mRNA upstream 328439 7255784 ~ 7264746 (+) True XLOC_001888
TCONS_00003744 mRNA downstream 19063 7636811 ~ 7640797 (+) True XLOC_001893
TCONS_00003745 mRNA downstream 53512 7671260 ~ 7672949 (+) True XLOC_001894
TCONS_00003746 mRNA downstream 85503 7703251 ~ 7721903 (+) False XLOC_001895
TCONS_00003747 mRNA downstream 91976 7709724 ~ 7723457 (+) False XLOC_001895
TCONS_00003748 mRNA downstream 100408 7718156 ~ 7721764 (+) False XLOC_001895
TCONS_00003739 other upstream 15134 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 383077 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 1823573 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 2440784 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 2445603 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003759 other downstream 725440 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1244773 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1251720 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 1728648 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 2108026 9725774 ~ 9725891 (+) True XLOC_001937

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00010653 True 1074 mRNA 0.59 7 CM030129.1 38325685 ~ 38339014 (+)
mexican tetra (Astyanax mexicanus) TU242055 True 2076 lncRNA 0.50 7 NC_035916.1 23503354 ~ 23514708 (-)