RNA id: TCONS_00003748


Basic Information

Item Value
RNA id TCONS_00003748
length 507
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_001895
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7703251 ~ 7723457 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgttctgcctttgtgctttgttttctttgtttgctcGACCATCGTGTTACATGTACATCTATGTGAACACCACTGAGGCGGAGCTTCAAAAGAACTTCACCAAGCTTTCTGAACTTCAGGAGAAAGTGCGCAATGGAACAGAAACAGAGCCTTTGCCTCCTGAGCTGCAGCCACTCATCACTGGACTCGACGACCAGGACTCAGAAAACACTGTGATCGACCCAGTAGTGCGGATCTTCTTGAAAAGACAAAAACGTATGCAGGAGGTCAGGAAGAGACGAGAAGCTTCTATGCTTGAACGCTTCCAGAGATTTGCCTCAAAGAAATACTACTCCATTAGACGAGGGTTTTTGATGACAGCCATTGCTTTGCGGAATTTGGCAGTTGGTTTGCCACCGATTGAGCAACTGACCAAAGAAGTGGCCTACGCCAACCTGAAGGAGCCAGAGACTGAGATGAGTCAGGATGAGCATCTGAAAGACGAGGGGGGGCACggagagctgtga

Function

GO:

id name namespace
GO:0017187 peptidyl-glutamic acid carboxylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019842 vitamin binding molecular_function
GO:0008488 gamma-glutamyl carboxylase activity molecular_function

KEGG:

id description
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis

ZFIN:

id description
ZDB-GENE-030826-27 Predicted to enable gamma-glutamyl carboxylase activity and vitamin binding activity. Predicted to be involved in peptidyl-glutamic acid carboxylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; digestive system; fin; otic placode; and polster. Human ortholog(s) of this gene implicated in combined deficiency of vitamin K-dependent clotting factors 1. Orthologous to human GGCX (gamma-glutamyl carboxylase).

Ensembl:

ensembl_id ENSDART00000189101

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003730 lncRNA upstream 615402 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005823 lncRNA upstream 962390 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 1033360 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 1073381 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 1089159 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00005678 lncRNA downstream 86947 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 121642 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 148845 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 256753 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005679 lncRNA downstream 266261 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00003745 mRNA upstream 45207 7671260 ~ 7672949 (+) True XLOC_001894
TCONS_00003744 mRNA upstream 77359 7636811 ~ 7640797 (+) True XLOC_001893
TCONS_00003741 mRNA upstream 100408 7593185 ~ 7617748 (+) False XLOC_001892
TCONS_00003750 mRNA downstream 76323 7798087 ~ 7805010 (+) True XLOC_001896
TCONS_00003751 mRNA downstream 369380 8091144 ~ 8098092 (+) False XLOC_001903
TCONS_00003752 mRNA downstream 369380 8091144 ~ 8098099 (+) False XLOC_001903
TCONS_00003753 mRNA downstream 369926 8091690 ~ 8097870 (+) True XLOC_001903
TCONS_00003754 mRNA downstream 379965 8101729 ~ 8130593 (+) False XLOC_001904
TCONS_00003739 other upstream 140105 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 508048 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 1948544 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 2565755 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 2570574 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003759 other downstream 621424 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1140757 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1147704 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 1624632 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 2004010 9725774 ~ 9725891 (+) True XLOC_001937