RNA id: TCONS_00005826


Basic Information

Item Value
RNA id TCONS_00005826
length 6012
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_001900
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7978517 ~ 7984582 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtggtggtttggtggtgattgacagggtgcgcgcgcgtgacgtgtctgaggagagacacggtggggaggggtgagaagggtgcgcgacgatgcctatttgaggactgggagagagacgcgagattaccgggagatcatcactcgtttgcgggcatccggagactcgcgaaacttcccgccctactcataattctgtcttcatgtagccgtaagcctattacatataaaacactgtgatataaccgcgctcggatcggatcgctttctcactgcaatcgaaccgctccagggttcgtttcaatcgagccgagaccacctcattcaagcaatctcggagcgattactttggcgcggaacagagtgcgattgccctgttcacatatgccaatcgaaccgcgctaactgggcaaacgagatacgttccgaaacaaaagtgtaggtgtgaaagcaccctaagagctGTCAGCTTGGTGTCAGGGcttttttcaggaaaaaaaagataAGTACCCTAATGATGCCGCTGTGCTTGAAAAAGTCAGCGACTTCCTCCAACGTAGCATTCTCAGTCAGTCCCGTGATGTAGATAGTGCTGTTTTCAGAGTCATCTTGCTCCTCTGGGGCTCCTAAGGAGAAAACAGGAGTTAAAATcaagaaatgtataaaaatgaacAGTGTCAAAAAACAAAGTGTAAACCTACCCATTTCACCATCTATTCCAGATTTTCATCAAGCAGGAcaccaaaagaaaaagaaaggggGAAACAAGTTAGTTTACAAGCAGAGCTTCAAGCACCTGACAACATTATACTAGCATTTCTGCCCCGGCACATTTGCTCTGAGCATTCAAAGACATAAGTCAAAATACCCTTGTGCTTATTGACCCATAAATAGTTTGATTGTTAAAGTATTAAGATGAGATTTATTTGAAAgctatttaggtttttttttttataactccaGTGTGCCTTAAAGTAGAATGttatatttatggaaaaaaacaaaccCTTGAAAATACAAGGACCCAAATTGGACTCCATACCTGATATCATATGAAATTGAAAAATGTAGTAAACACTGAAAAGGTAAAATCATCTACATGGCTGGGTCGGCCAATTACCATTAACTCCTAAATATGAGAGCAAAAGTAACCTTTGACTGGAGTCCACACTCAGGATTTTTAACCAATAAAAATAGGACTGAACCATTCCTATACAACCAATGACAAAATGttgaaaactcttaaaattctAGCCGACAGTGTATTGTTTTGCAAGGCATTATTTTCATTTTCCCTTTGGGAAAAACACCAATAAAAGGTGGAGAATTCTAGTGTATAGTCTTGTGATTCTAATTAAACTTACCACCAGGCTTACTGAAGCCACCTCTGTCTCCAGCGATGCTGGGGGGGAATAAGCGAAGATATGAAGGCGATATCCCTTAAAACAGCCACTTCGGTACCACAAAAGGGGTAATGGGGGTATTTGCACAGTTCTAACTGACTCTTAACCTTCAACAAGTTTCCCTTATATAAAAACAAGATTTCTGAGAATAACACTTTGTTAGGGTGATGTAGCATTACAATGTCTCTGCCCTCATCCTGACTTCATTGATTTACAATTTAAAGACATTAGTGGCTGAACATTATTGGGGTTGTATGAAGCACAAGTAAGGGATGATCTTTATTACCATTGTAGGTGGAAAACCCCAGAAATGTGTACACTGACATTGAGAGGTAATTGTTTCAGATGCAGCCTTGCTACCATCTTTACATGACACCAAAAAAGATTAAAGAGAAGTAAAAAGAGTATTTAAAATGCCAGCTAAGGACAAGAGAACCTTCCCTTGTGGATTTATATATTTGTTGGTGGCAAATGTTCCAACTGGTCTAGAGGTAGCCTGTGTATGGATGCATCTGAAACAATCTGCTTACATGAATCTTGTACATGCATTTTAGTTAAATAAAAGAAGCAGATAAACTATAACACCATTTTTCTCTTTACAGAAATGATGCTGATTAAAgaaattatacaacacaaaaggGCTATCAAAACATCTTTGTATAAAGAGTAAACTTGTATGTTCAGATAATTATTACAACTTTTCTTTGGTTGTAAAACATGACTCTCATTCCTGTTGGAAAAACCCATTTGGAACACCTCTTGTCACGACCAACTTTAGGTCCCCATTTCAAAAGGCTGCCGGCCCAGACTCAGAACTGAGTAGCGGTACTGTAAAAGTATTGATGTGTTTACATGGCTCTCACTTTGTTACCTGTAGCGTATAAATGCGACAAAGCATGTTAAAGAAAAAGTTTCATGATGCACAAGACAATTGCAATCCAAATGTGTAACAAAGAAAACATACCCTTACTTTAATAGGGAAAATGAATGCAGTGTCTTTTCAAGCATACTTTAAAAACTCAAATGCTATTCATGTTTACTGCAATGTAAATTTACCaatgtatcaaaaaaaaaaattatatttaaatagttatttaaaagcACAGAGAGGGACATGCTCTAGAAAATgattaagtaattaaaaaaacaaggGTATTTTGTAAGTTAAGCATCACTGCATTCACTTTCATATTTGTTTTGCATTAGTCCTGCTTTTGGTAGCATTGAAAGAAGTCTTTGGGAACCAATATTTGATTGTAAAACTCTTTACTTAATGCAAACCAGAATTATagaacaacattttaaaaaccaCAGTAGGTAAAAGTTTTATTCTAGTGAATTTTACCCATTTTAACACGTTTTCTGAAAATATCCCTAATTTTCACTTGGCCCTTTATCAAGAACAATAACTGTGAACTTTAACTACAATAGTATCCACACTTAAGACATGATCACATCTTGTTTACAGGGTTCCCACTTTAAAACAAATACCAATTTCCCTTATTTTCCTTGTataaagctgaatttccatgacaTGTAGTGAACAAAACAGGTCGATGATGTGCTTATACATCAACTTTACAATTATAATAAcactaaaacgttttttttttaaggatgcATATCATTTTGCAGGGCATTAACACCTACTATGAGAACAACCGATAATTTACCTCAGATTTTGGCTGTGAAGTACTCCGCCTTAAATATCTGATGTAAAACCTAgtgactaaggccccgtttacactagtacgttttagttttaaaacggcgttttagaatgaaaacgatccgcatccacactcgcgttttacccagcgtttctgaactgctctccgtccacaccaaaacgctgaaaacgcacatcacgtgaccacacagacgctctcgggcaagcgctgcagcccatgtacccagatgagagctgtgctagtcggacttctcattaagcatctcccgctggatttaatctcactatatttattaaacgggatatttcatttatcttgttgtctttatctaacgacatattccctgactttgggcattggaatctattacttgttctcaggtaacgtgttttggctgagcgcaaagataagttaatgattaatgtaaccacgtacattctgtatattgactgatcgcttgcctttatttcctataatgtataaacttattgtatgttatacttttaaaatggccattatcgattcttaaaactgatactcagcaaaagagaggggatgtttcgtattttcactgaaattgaaaggaggcagttgttatcagctccgttttgttataaatatccacacagtgaagatgacgctcatatgcagcacgacgcctcaacatttctgctgtctgtttagttgctaatattaaaattaaaataggcagttccttaaatcaagtttacattttattgttgagaaagtgaaacaacgaagccagggtgatgtgaatgaagttataaagtacactgttccctttgaagatttacccgtgtcctcggtatagtctgcttttccatatcaaactgagaagaagagatgcagccttgatcaaacttgcgaagtctgaacttacacggagaagattcaggactgaactgtgttttaggctacttaatattcaggaaaagccccaatcagagaggcgaacgtctgcagccccgcctccgttttcagatgtctccgttttccatcatccacactgagacggagcagcagcgtttcagaatgaaaacggcctctccagcgttttcgaaacgctccgttttcggcgctcgagaactccggcgtagtgtggacggttggcgtaaccgtagcaaaacttatgcgttttcaaactaaaacgcattagtgtaaacggggccttaaactGACTAAAGTGACTGTCAGGTTATGAGCATGAAAAAGAAAATGGAGCTAAAAAATATGGCCCAACCAAGTAATCATAAAAATGGGCATGAAACAAAACTTCCCTGTCATTCCATGACTTTGTGGAAAAAAACGGAACTTTTAACGTACAGGACAGACCATTTCAATTTGTATTACCCATGGGAACCCAGTGTTTATTGTCAGTACACTGTAGTTTTGTAGTTTACTTTTTTAAAGGTTTACGCACTCTCATGTCATTTTTGCAATAGATGTGGTCCTAGGGGCCATTTTTACAGAATGCATTTTGCATCTAAAACGTGGGTGCAGCCCTCagggaattattatttttaaagagcTAGGTGTGATAATTGAAGAAATGTTACACTATTTAGGGTATGCACACAAAGCCACCATGAGCACCTCGTTTGCAATGTTGCCATCAAATAAAAATCTGTCAAGCCAACAGAAGCTTGCCCTGCCTTCAAGTAGTTCTGACCAGTTCAATAGCTTAAATCTGACCAGTGTATGAAGTTGCATGTAAAAGCTGAAACTTTTATAGAAACAGTGTCTCAAAAACATGACACTCATGCAAGGCAAGATGAGTAATGGTCACTCAAGCGCAATGAAAAAGTAGCCCATTGTTATGGAAAAATGCATTGTGTGAATGGCCCCCTACATTGGCCAGGCTTTAGGAGTCATTTCAGTTGAGTAAACTGAATTAAATCTCTACCCGAAAGCATTTATTTGCAGATAGATCTACAGGAACCCGCTTATATTAATGAATGCACCTTTTGGATTAATCCTAAATgcttactaaatatttttaggaCCATTTAGAAAACCGATCtttaaaattctgacttcataatGCTTAATCATCTACTTCCTAGTCTACAATCTTAACTCCATTTAATTTATAATCTCTCAGATTATGATAAAATGCATAAGAGattgaatttatattttttcccaaAGCACATTCTCAATCATCTTACCTTAGAAAACAATGAGGCAAAGCTGAGAGCAGCACTACTTCAGGATTAAgtcaatttaactttttaaaaaaattttattatagtGATTTTCAAATAATTTAGGGAGAAAAAGCTATAATATTCGAGACGAAATGTCCAAACTGTGTTTGAGATGtcaaaatacagtatataattcAAGCTCTGGCTCCAAAActataaagttacatttaaattttaaaataaagagtGGCTCTCAGCCCTGTGTGGCCTCTTTCAGCTCCTGTCTGAGGGAAAAAGAAGTAGTGAGATGAGAACCTATGAATGCACACTTACCCCATGCCTCCACGGCTCATGCCCCCTCGCATGCCACCACCTCCTCGCATCATTCCCCGGTCAAACCCACCCCGGCCGCGCCCGCGGTTCTCCCCCCCTCCCATGCCTCGGCCCTCTCCAGGGCCCCCATATCCTCCAGATTCAGGGCCAGAATAGCCACCTCCATTCTGATGGTCTGGTCTGTAACTACCTGTAAAAGAATCAAGTGTcactgacatttttgcatttgaacACAAGTCTCCGATTAGCCACCTCCAGCAGACTTACCATACTGGTTTGGTGGTTTATAGTCTGATTGGCCATAACCTCCTCCAGTACTGCCCTGCTGTCCATACTGACTGGCAGAAGGCTGTCCATAAGATCCAGAAGGCGGAGCATAGCTGGAAGGCGGACTCTGCTGTCCGTAGCCTCCTTGCTGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005825 lncRNA upstream 76629 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005824 lncRNA upstream 128644 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005678 lncRNA upstream 169274 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00003730 lncRNA upstream 875763 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005823 lncRNA upstream 1222751 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005679 lncRNA downstream 3443 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00005827 lncRNA downstream 51602 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00003758 lncRNA downstream 267561 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00003761 lncRNA downstream 417514 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00005680 lncRNA downstream 662377 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003750 mRNA upstream 173507 7798087 ~ 7805010 (+) True XLOC_001896
TCONS_00003747 mRNA upstream 255060 7709724 ~ 7723457 (+) False XLOC_001895
TCONS_00003746 mRNA upstream 256614 7703251 ~ 7721903 (+) False XLOC_001895
TCONS_00003751 mRNA downstream 106562 8091144 ~ 8098092 (+) False XLOC_001903
TCONS_00003752 mRNA downstream 106562 8091144 ~ 8098099 (+) False XLOC_001903
TCONS_00003753 mRNA downstream 107108 8091690 ~ 8097870 (+) True XLOC_001903
TCONS_00003754 mRNA downstream 117147 8101729 ~ 8130593 (+) False XLOC_001904
TCONS_00003755 mRNA downstream 117181 8101763 ~ 8141923 (+) False XLOC_001904
TCONS_00003739 other upstream 400466 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 768409 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 2208905 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 2826116 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 2830935 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003759 other downstream 358606 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 877939 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 884886 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 1361814 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 1741192 9725774 ~ 9725891 (+) True XLOC_001937

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU150172 True 3114 lncRNA 0.43 3 NC_048566.1 29577661 ~ 29581410 (+)
eurasian perch (Perca fluviatilis) TU150172 True 264 lncRNA 0.47 2 NC_053122.1 3046939 ~ 3047847 (+)
bowfin (Amia calva) TU150172 True 4187 lncRNA 0.38 2 CM030135.1 26849626 ~ 26855442 (+)