RNA id: TCONS_00003755


Basic Information

Item Value
RNA id TCONS_00003755
length 909
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_001904
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8101729 ~ 8142213 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGAGAACAACATTTCAAGGATAATTTCTGGAACACCGATATCACCTCTACGGCTGGATATGACACCATCATCCAGCACTTGAATGATGGCAAGAGGACCTGTAAGGAAATCGAAGACTTCATGAAAGCCAGAGCTGCTATAGAAGAAAAATATGCCAAGGAGCTGCTGGGGTTGTCAAAAAAAGTGTGTGGACACAGTGAAATGAACACGTTGAAACGATCCCTTGATGTTTTCAAATTACAAACCGAAAACATGAGTTTATCTCATCTGCATTTGGCCCAAACTATGAGGGAGGAAGCCAAAAAATTAGAAGACTTCAGAGAGAAACAGAAAGAGGCCCGGAAAAAGgtagaacagcaaatggatgcTCTTCATAAACAGAAAGCCGCTCAATATAAGAAAACAGCTGAGGCAAAGAAGAGCTACGATCAAAAATGCAGAGACAAAGAGGAAACAGAGCAGAACATGAACAGAAGTGCCACCACTTGCAGTGCCAAGCAGCAAGAAAAGCTGTACGCCAAAACACAACAGGCCAAGCAGGCGGCAGAGGAAGCCGACCGGATATACAGTCAGAATGTGTCTGTTTTAGGGAAGATGCGAGAGGAGTGGTTGAATGAGCATGTTAAAGCCTGTGAGTTTTTCGAGAAACAGGAAGTGGAGAGGATTAACACTTTGAGGAATATAGTGTGGACTCATCTCAATCATCTCTCCCAGCAGTGTGTCTCCAGTGATGAGaTCTATGAGGAAGTGAGGAAGTCTCTGGAGCAGTGTAACATTCAAGAAGACATTGAGCATTTTGTCAACCTCAGGAGGACCGGAGACAAACCACCAGCACCCATTCCATATGAGAACTTCTACAACAATCAGAGATCTGGTGTCGTTCGCTCACTTCCACCGCCCAGGTGA

Function

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-091204-90 Predicted to enable actin binding activity. Predicted to act upstream of or within cell migration and cytoskeleton organization. Orthologous to human PSTPIP2 (proline-serine-threonine phosphatase interacting protein 2).

Ensembl:

ensembl_id ENSDART00000123447

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005827 lncRNA upstream 63874 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00005679 lncRNA upstream 109304 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00005826 lncRNA upstream 117181 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005825 lncRNA upstream 199875 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005824 lncRNA upstream 251890 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00003758 lncRNA downstream 110220 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00003761 lncRNA downstream 260173 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00005680 lncRNA downstream 505036 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00005828 lncRNA downstream 567562 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005681 lncRNA downstream 631513 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00003752 mRNA upstream 3664 8091144 ~ 8098099 (+) False XLOC_001903
TCONS_00003751 mRNA upstream 3671 8091144 ~ 8098092 (+) False XLOC_001903
TCONS_00003753 mRNA upstream 3893 8091690 ~ 8097870 (+) True XLOC_001903
TCONS_00003750 mRNA upstream 296753 7798087 ~ 7805010 (+) True XLOC_001896
TCONS_00003748 mRNA upstream 379999 7718156 ~ 7721764 (+) False XLOC_001895
TCONS_00003757 mRNA downstream 55904 8197827 ~ 8266094 (+) False XLOC_001905
TCONS_00003760 mRNA downstream 260006 8401929 ~ 8412964 (+) False XLOC_001907
TCONS_00003762 mRNA downstream 296007 8437930 ~ 8468949 (+) True XLOC_001908
TCONS_00003763 mRNA downstream 339737 8481660 ~ 8484001 (+) True XLOC_001909
TCONS_00003764 mRNA downstream 385273 8527196 ~ 8530065 (+) True XLOC_001910
TCONS_00003739 other upstream 523712 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 891655 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 2332151 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 2949362 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 2954181 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003759 other downstream 201265 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 720598 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 727545 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 1204473 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 1583851 9725774 ~ 9725891 (+) True XLOC_001937

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_06473293_06476260.mRNA True 568 mRNA 0.41 6 CI01000304 6473293 ~ 6476366 (-)