Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003756 |
| length | 1020 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 13 |
| gene id | XLOC_001904 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 8101729 ~ 8142213 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016477 | cell migration | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0003779 | actin binding | molecular_function |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-091204-90 | Predicted to enable actin binding activity. Predicted to act upstream of or within cell migration and cytoskeleton organization. Orthologous to human PSTPIP2 (proline-serine-threonine phosphatase interacting protein 2). |
| ensembl_id | ENSDART00000185333 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005827 | lncRNA | upstream | 63874 | 8036184 ~ 8037889 (+) | True | XLOC_001902 |
| TCONS_00005679 | lncRNA | upstream | 109304 | 7988025 ~ 7992459 (+) | True | XLOC_001901 |
| TCONS_00005826 | lncRNA | upstream | 117181 | 7978517 ~ 7984582 (+) | True | XLOC_001900 |
| TCONS_00005825 | lncRNA | upstream | 199875 | 7870609 ~ 7901888 (+) | True | XLOC_001899 |
| TCONS_00005824 | lncRNA | upstream | 251890 | 7843406 ~ 7849873 (+) | True | XLOC_001898 |
| TCONS_00003758 | lncRNA | downstream | 109930 | 8252143 ~ 8263324 (+) | True | XLOC_001905 |
| TCONS_00003761 | lncRNA | downstream | 259883 | 8402096 ~ 8408875 (+) | True | XLOC_001907 |
| TCONS_00005680 | lncRNA | downstream | 504746 | 8646959 ~ 8650855 (+) | True | XLOC_001913 |
| TCONS_00005828 | lncRNA | downstream | 567272 | 8709485 ~ 8715748 (+) | True | XLOC_001917 |
| TCONS_00005681 | lncRNA | downstream | 631223 | 8773436 ~ 8773659 (+) | True | XLOC_001919 |
| TCONS_00003752 | mRNA | upstream | 3664 | 8091144 ~ 8098099 (+) | False | XLOC_001903 |
| TCONS_00003751 | mRNA | upstream | 3671 | 8091144 ~ 8098092 (+) | False | XLOC_001903 |
| TCONS_00003753 | mRNA | upstream | 3893 | 8091690 ~ 8097870 (+) | True | XLOC_001903 |
| TCONS_00003750 | mRNA | upstream | 296753 | 7798087 ~ 7805010 (+) | True | XLOC_001896 |
| TCONS_00003748 | mRNA | upstream | 379999 | 7718156 ~ 7721764 (+) | False | XLOC_001895 |
| TCONS_00003757 | mRNA | downstream | 55614 | 8197827 ~ 8266094 (+) | False | XLOC_001905 |
| TCONS_00003760 | mRNA | downstream | 259716 | 8401929 ~ 8412964 (+) | False | XLOC_001907 |
| TCONS_00003762 | mRNA | downstream | 295717 | 8437930 ~ 8468949 (+) | True | XLOC_001908 |
| TCONS_00003763 | mRNA | downstream | 339447 | 8481660 ~ 8484001 (+) | True | XLOC_001909 |
| TCONS_00003764 | mRNA | downstream | 384983 | 8527196 ~ 8530065 (+) | True | XLOC_001910 |
| TCONS_00003739 | other | upstream | 523712 | 7573316 ~ 7578051 (+) | True | XLOC_001890 |
| TCONS_00003731 | other | upstream | 891655 | 7083771 ~ 7210108 (+) | False | XLOC_001887 |
| TCONS_00003693 | other | upstream | 2332151 | 5744923 ~ 5769612 (+) | False | XLOC_001866 |
| TCONS_00003679 | other | upstream | 2949362 | 5151349 ~ 5152401 (+) | True | XLOC_001855 |
| TCONS_00003675 | other | upstream | 2954181 | 5135842 ~ 5147582 (+) | True | XLOC_001854 |
| TCONS_00003759 | other | downstream | 200975 | 8343188 ~ 8343305 (+) | True | XLOC_001906 |
| TCONS_00003778 | other | downstream | 720308 | 8862521 ~ 8868895 (+) | True | XLOC_001921 |
| TCONS_00003779 | other | downstream | 727255 | 8869468 ~ 8880126 (+) | False | XLOC_001922 |
| TCONS_00003791 | other | downstream | 1204183 | 9346396 ~ 9348506 (+) | False | XLOC_001931 |
| TCONS_00003802 | other | downstream | 1583561 | 9725774 ~ 9725891 (+) | True | XLOC_001937 |
