RNA id: TCONS_00003761


Basic Information

Item Value
RNA id TCONS_00003761
length 554
lncRNA type retained_intron
GC content 0.46
exon number 2
gene id XLOC_001907
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8401929 ~ 8412964 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAACACAACAGagcttTCAACTCATGTGACCACCTGCCAAAAATGTCCCGGTATCTGAAGCATTTCACCGCGGTGGGTGATAATAAAAACGCTGTCCCAACATGGCATGAGGAAGACACATCCCACCATGTCACGACATTGCACGATGCCCCTGATGGCCTGGAGGTTTCAACAGGACAGCATTTGGGACAGCTCAGCTTCAGGGACTCCCTACGAAAGCTGTACAGTACAGAGAGATTCCAGGTAAACAATTGCACTATTGgcctgtgtatatatacacatgttaatgttgtttacatCATTGCAAATTAACCGGCGACTGTTATTTTGTTGCTTAGATTGTTGTTGTGTGCTTGGTTGTCTTGGATGCCATTTTCGTACTATGCGAGTTGCTTATTGACTTGTCTATCATTGAAGCAGACCACCACAGAATAGCCCCACAGGTGAGTGCGCTTCAGATGCCCATACAGCAAGTTTGACTGAATATAATATggtatccctgctgaaaaatccagcttaaaccagcctaggctggttggctggtttaggctgg

Function

GO:

id name namespace
GO:0071294 cellular response to zinc ion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0071467 cellular response to pH biological_process
GO:0006811 ion transport biological_process
GO:0010043 response to zinc ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030171 voltage-gated proton channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-040718-36 Enables voltage-gated proton channel activity and zinc ion binding activity. Acts upstream of or within proton transmembrane transport and response to zinc ion. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; neutrophil; and pleuroperitoneal region. Orthologous to human HVCN1 (hydrogen voltage gated channel 1).

Ensembl:

ensembl_id ENSDART00000158584

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003758 lncRNA upstream 138772 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005827 lncRNA upstream 364207 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00005679 lncRNA upstream 409637 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00005826 lncRNA upstream 417514 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005825 lncRNA upstream 500208 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005680 lncRNA downstream 238084 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00005828 lncRNA downstream 300610 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005681 lncRNA downstream 364561 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005829 lncRNA downstream 713518 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 1237628 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00003757 mRNA upstream 136002 8197827 ~ 8266094 (+) False XLOC_001905
TCONS_00003756 mRNA upstream 259883 8101763 ~ 8142213 (+) True XLOC_001904
TCONS_00003755 mRNA upstream 260173 8101763 ~ 8141923 (+) False XLOC_001904
TCONS_00003754 mRNA upstream 271503 8101729 ~ 8130593 (+) False XLOC_001904
TCONS_00003752 mRNA upstream 303997 8091144 ~ 8098099 (+) False XLOC_001903
TCONS_00003762 mRNA downstream 29055 8437930 ~ 8468949 (+) True XLOC_001908
TCONS_00003763 mRNA downstream 72785 8481660 ~ 8484001 (+) True XLOC_001909
TCONS_00003764 mRNA downstream 118321 8527196 ~ 8530065 (+) True XLOC_001910
TCONS_00003765 mRNA downstream 125875 8534750 ~ 8576218 (+) False XLOC_001911
TCONS_00003766 mRNA downstream 128950 8537825 ~ 8576218 (+) False XLOC_001911
TCONS_00003759 other upstream 58791 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 824045 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1191988 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 2632484 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 3249695 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003778 other downstream 453646 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 460593 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 937521 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 1316899 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 1504188 9913063 ~ 9913177 (+) True XLOC_001940

Expression Profile

//