Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003770 |
| length | 2087 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 1 |
| gene id | XLOC_001912 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 8629275 ~ 8631361 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0048738 | cardiac muscle tissue development | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0045766 | positive regulation of angiogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0060976 | coronary vasculature development | biological_process |
| GO:0043951 | negative regulation of cAMP-mediated signaling | biological_process |
| GO:1904325 | positive regulation of inhibitory G protein-coupled receptor phosphorylation | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0051281 | positive regulation of release of sequestered calcium ion into cytosol | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0090162 | establishment of epithelial cell polarity | biological_process |
| GO:1900107 | regulation of nodal signaling pathway | biological_process |
| GO:1903589 | positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis | biological_process |
| GO:0035987 | endodermal cell differentiation | biological_process |
| GO:0008078 | mesodermal cell migration | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0035479 | angioblast cell migration from lateral mesoderm to midline | biological_process |
| GO:0001702 | gastrulation with mouth forming second | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0060182 | apelin receptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050913-90 | Enables apelin receptor activity. Involved in cardiac muscle tissue development; cell migration; and gastrulation with mouth forming second. Acts upstream of or within with a positive effect on determination of heart left/right asymmetry and determination of liver left/right asymmetry. Acts upstream of or within several processes, including circulatory system development; endodermal cell differentiation; and mesodermal cell migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including angioblastic mesenchymal cell; blastodisc; cardiovascular system; mesoderm; and pleuroperitoneal region. Orthologous to human APLNR (apelin receptor). |
| ensembl_id | ENSDART00000129643 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003761 | lncRNA | upstream | 220400 | 8402096 ~ 8408875 (+) | True | XLOC_001907 |
| TCONS_00003758 | lncRNA | upstream | 365951 | 8252143 ~ 8263324 (+) | True | XLOC_001905 |
| TCONS_00005827 | lncRNA | upstream | 591386 | 8036184 ~ 8037889 (+) | True | XLOC_001902 |
| TCONS_00005679 | lncRNA | upstream | 636816 | 7988025 ~ 7992459 (+) | True | XLOC_001901 |
| TCONS_00005826 | lncRNA | upstream | 644693 | 7978517 ~ 7984582 (+) | True | XLOC_001900 |
| TCONS_00005680 | lncRNA | downstream | 15598 | 8646959 ~ 8650855 (+) | True | XLOC_001913 |
| TCONS_00005828 | lncRNA | downstream | 78124 | 8709485 ~ 8715748 (+) | True | XLOC_001917 |
| TCONS_00005681 | lncRNA | downstream | 142075 | 8773436 ~ 8773659 (+) | True | XLOC_001919 |
| TCONS_00005829 | lncRNA | downstream | 491032 | 9122393 ~ 9125863 (+) | True | XLOC_001926 |
| TCONS_00005830 | lncRNA | downstream | 1015142 | 9646503 ~ 9661896 (+) | False | XLOC_001935 |
| TCONS_00003765 | mRNA | upstream | 53057 | 8534750 ~ 8576218 (+) | False | XLOC_001911 |
| TCONS_00003766 | mRNA | upstream | 53057 | 8537825 ~ 8576218 (+) | False | XLOC_001911 |
| TCONS_00003767 | mRNA | upstream | 53057 | 8550435 ~ 8576218 (+) | False | XLOC_001911 |
| TCONS_00003768 | mRNA | upstream | 53057 | 8551897 ~ 8576218 (+) | False | XLOC_001911 |
| TCONS_00003769 | mRNA | upstream | 56122 | 8554929 ~ 8573153 (+) | True | XLOC_001911 |
| TCONS_00003771 | mRNA | downstream | 25056 | 8656417 ~ 8657684 (+) | True | XLOC_001914 |
| TCONS_00003772 | mRNA | downstream | 49369 | 8680730 ~ 8687894 (+) | True | XLOC_001915 |
| TCONS_00003773 | mRNA | downstream | 57317 | 8688678 ~ 8697787 (+) | False | XLOC_001916 |
| TCONS_00003774 | mRNA | downstream | 59575 | 8690936 ~ 8697780 (+) | True | XLOC_001916 |
| TCONS_00003775 | mRNA | downstream | 99627 | 8730988 ~ 8841038 (+) | False | XLOC_001918 |
| TCONS_00003759 | other | upstream | 285970 | 8343188 ~ 8343305 (+) | True | XLOC_001906 |
| TCONS_00003739 | other | upstream | 1051224 | 7573316 ~ 7578051 (+) | True | XLOC_001890 |
| TCONS_00003731 | other | upstream | 1419167 | 7083771 ~ 7210108 (+) | False | XLOC_001887 |
| TCONS_00003693 | other | upstream | 2859663 | 5744923 ~ 5769612 (+) | False | XLOC_001866 |
| TCONS_00003679 | other | upstream | 3476874 | 5151349 ~ 5152401 (+) | True | XLOC_001855 |
| TCONS_00003778 | other | downstream | 231160 | 8862521 ~ 8868895 (+) | True | XLOC_001921 |
| TCONS_00003779 | other | downstream | 238107 | 8869468 ~ 8880126 (+) | False | XLOC_001922 |
| TCONS_00003791 | other | downstream | 715035 | 9346396 ~ 9348506 (+) | False | XLOC_001931 |
| TCONS_00003802 | other | downstream | 1094413 | 9725774 ~ 9725891 (+) | True | XLOC_001937 |
| TCONS_00003803 | other | downstream | 1281702 | 9913063 ~ 9913177 (+) | True | XLOC_001940 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU483706 | True | 1765 | TUCP | 0.52 | 1 | CI01000304 | 6241233 ~ 6242997 (+) |
