RNA id: TCONS_00003779



Basic Information


Item Value
RNA id TCONS_00003779
length 927
RNA type processed_transcript
GC content 0.45
exon number 7
gene id XLOC_001922
representative False

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8869468 ~ 8884205 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GCCGCCGCTGACTGGGACAGAATGGCCACGAGGAAGACTGAGGCTTGGAAGCCGGCGAGAGAGTGTTGAGGGCCGGCAGGATAGGGACGGAGAGTCAGATGGGCGGCAAAGCAAAAACAGACGGGAACAGGCTTGAAGGCAGACGGAGAAAAAACACTTTAGGAAAATCAACAGGATGACATCGGACACGACAAAACTCACAGGATATACAAGGAATAGGACTAGACCAGGAGATCGCCAGACATGCCGGAAGGGGAAAAACTACGATCTGACACAGAACTACGATCAACAGAGGGATAAATAGGGGCAGAAATCAAGGaaaccagGTAACATTCGAGATCAACTTTGACTTCAATCTGAATCAGCTACAGAAAAACGCGGTTGTGAACTTTGAAGCACAAAGTGACAGCGAAGAGGAAGTGACTTCTGATAACAAGGTCTCCCTCTCCATTCCAGTCCAGTATGATGCCGAAATCATCCTCACCAGaGACATAAACTTGGATTTTTGCATGATTGGAGAAGAGGATCAAGTCCAACATAAAGTATCAAATTTTGATGACATCGGCCGAGAGTTCAACATAACGTTAAGAGTTTCTACTGGAACCTTCCCAGTAAATCAGGCTCATCTGCGCATCTCACTGCCCACCAAAACCAAGAATGGAGATCATTTACTATACTTGACTTCAGTCAAAACATCACCTGCTGCAAATGTGCGATGTGACGACAGTCAACTGATTGACCCTCTGAAGATCAGAGAGAAAACATACACGGCCAGCTTCACTAAACAGAGCTTCAGAGGAACCACAGAACTGGAACTGTAAGTCATCTAAATGTGAACAGATGATTTGTCTCCTCAAAGATCTAGAGATGAAGAGCAGCTACTTTATAAACATCACTGCCAGAATCTGGAATGGCACATTTGCTTAT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000134694

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005681 lncRNA upstream 95809 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005828 lncRNA upstream 153720 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005680 lncRNA upstream 218613 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 460593 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00003758 lncRNA upstream 606144 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005829 lncRNA downstream 242267 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 766377 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 769246 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005683 lncRNA downstream 769478 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00005684 lncRNA downstream 769523 9649649 ~ 9661896 (+) True XLOC_001935
TCONS_00003777 mRNA upstream 11263 8847033 ~ 8858205 (+) True XLOC_001920
TCONS_00003775 mRNA upstream 28430 8730988 ~ 8841038 (+) False XLOC_001918
TCONS_00003776 mRNA upstream 28507 8767541 ~ 8840961 (+) True XLOC_001918
TCONS_00003773 mRNA upstream 171681 8688678 ~ 8697787 (+) False XLOC_001916
TCONS_00003781 mRNA downstream 5643 8885769 ~ 8940896 (+) True XLOC_001923
TCONS_00003782 mRNA downstream 88077 8968203 ~ 8975980 (+) False XLOC_001924
TCONS_00003783 mRNA downstream 88098 8968224 ~ 8976823 (+) True XLOC_001924
TCONS_00003784 mRNA downstream 212689 9092815 ~ 9097996 (+) True XLOC_001925
TCONS_00003785 mRNA downstream 279153 9159279 ~ 9184667 (+) True XLOC_001927
TCONS_00003778 other upstream 573 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003759 other upstream 526163 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1291417 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1659360 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 3099856 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003791 other downstream 466270 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 845648 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 1032937 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003821 other downstream 1921579 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 1942629 10822755 ~ 10823448 (+) True XLOC_001951

Expression Profile


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