RNA id: TCONS_00003781


Basic Information

Item Value
RNA id TCONS_00003781
length 3594
RNA type mRNA
GC content 0.46
exon number 29
gene id XLOC_001923
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8885769 ~ 8940896 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTGGATGGCAACATGGACTTACAAATGAAGATTCTACAGGTACTTCTCGCTGTTCTGTGTTTCAGCATCAATAACTCTCAGGGTTTTAATGTGGGGACAACAGGAGCAAGGATTTTCTCAGGGTCATCAGCAGAGCAGTTTGGGTACACTGTACGGCAGTTCAGCAACAGCCAAGGAAAATGGCTCCTTGTGGGATCTCCATGGAAGGGTTACACTCAAAATCGCAAGGGAGAAATCTATAAATGTGATATGAACAAACCTGGAAGCGTCTGTCAACCACTGAATCTTCAAAATTCTGTGGATGTGTCAAGCATCTCCAACGGCAACAACATCAACATGAGTCTAGGTCTTACTCTGACTCCAACTACCAAAAATAATGGCTTTATGACGTGTGGTCCGCTGTGGGCTCAGCTCTGTGGAAGTCAGTACTTTTACCCAGGAGTCTGTGCTGATGTGAGCCCACAGTTTACCCTCCAGTCGGCTTTTTCCCCTGCTGTTCAAACTTGTGGTAGTCTTATGGACATTGCCATTGTTTTAGATGGATCCAACAGTATATACCCATGGGAACCAATTGTTGATTTCCTGGTGAAACTGTTGGAAAACTTAAATATTGGACCTCAAAGCACCCAGGTCAGTGTTATGCAGTACGGTGTTGACACTACGTTCCAGTTTTACTTGAATTCCTACAAGACAAAAGAGTCTATGATTAAAGCAGCTTCAAATATGCAGCAGAAACAAGGATTAGAGACCAATACTTTCAAAGCCATTGACTTTGCAAGAACGAATGCATTCTTACCACAAAATGGAGGCCGTCCTGGAGCCACTAAAGTGATGGTGGTGGTAACAGATGGAGAGTCACATGATGCAAATATAAGGAACAAAGTTATTGCGGAATGTGATAGCCAAAATATCACACGTTTTGGCATTGCGgTTCTTGGATATTACATAAGAAATGATATTGACACAAGCAAGCTCATAGCTGAAATTAAGTCAATAGCAAGTAAACCAACTGAGAAATTCTTTTTCAACGTGTCTGAGGAAGCAGCACTTATAGAAATCGTGGGAACTCTCGGAGATCGAATCTTCAACATTGAAGGTGTTGGAAAAGGTACTGGGGATAATTTCGAAATGGAAATGTCGCAAGTGGGATTCAGTGCATACCAGACTAGAAATAAgGATGTGATTCTGCTGGGAGCAGCTGGAGCATATAATTGGATCGGGACTGTTGTTCACCAGACTGCTCAGAAATCAGACATTTTGCCCAAAACGGCTTTTGAGAAAGTCTTGGAGGACAAAAGCCACTGTTCATTACTTGGCTACTCTGTGAGCTCTGTGACTGACGGATCGTCTGAGTATTATGTGGCTGGTGCTCCTCGTGCCGTTCACAGAGGACAGGTTGTAGTTTACAGCATTAACAGCCAGAAACAGGCTGTCGTCATAGACTCTCAAAGAGGAGATCAGATCGGCTCTTATTTTGGCAGTGTTCTCTGTCCTGTGGATGTGGACTCTGACGGTGTGACGGATCTGCTGCTGGTCGGAGCTCCGATGTACATGAGCGAGGAGAAAGCTGAAACCGGACGAGTCTACATGTTCACCATTACCAAGggtATCTTGAGTAACCAGGGTTTCTTAGAGGGCTCACAAAAGAACGCTCGGTTTGGGACAGCCATCGCTGCTGTCCCAGATCTCAACCTGGACGGCTTCAGTGATGTGGTTGTTGGAGCGCCAATGGAGGCCAATGACCAAGGTGCCATTTACATCTACTATGGTCACAGAAAAAGCATAAAAAAGCAGAGCTCACAGAGAATCGTTGGAGGGAAACTGGACTCAGCTCTGAAGTTCTTCGGCCGCTCTCTGGACGGCAGTGGAGATATGAACGGAGACTCGATCCCAGATGTCGCAGTGGGGGGTTTTGGGAAAGTCGTCCAACTCTGGAGTCGAGGTCTGGCTGTGGTCACGGCCAAGGTTTCCTTCACCCCTGATAAGATCAGTATCTTGAGTAAACCGTGTCGCTACAGTGGCCGGCAGGTGTCCTGCTTTAAGGCTAAAGCATGCTTCAGTGCAACCTTTAAGCCAACAAACTCTATCAGGCTAATCGATGTCAAGTACAACCTGACGCTGGATGCAGATCTGCAGGATTCCCGGGTCAGTCCTAGAGGTTATTTCAGCAACTTGGAACGGGTCATCCAGAAAGGCATCACAGTCTCTGCACAGGACTTGTGTGAAGAGCATGAGGTCTACGTGCAGGAGACCCCTGACCTCGTCAACTCAATTGCCTTGCGTGTGGACGTATTTCTCGGCAATCCAGATGCAAACCCAGTTCTGGATGTCTTCAGTCCTAATGCATGGGAGTTTTTTATCCCGTTCTCGAAAGACTGTGGCCAAGATGACGTCTGCTTGAGTGACCTGGTGTTGACTGTGGAGAGTGAAGAGAAACTTGGtaaaaccCCACTGGTGGTCAGCCAAAACAAGAGAAGACTGTCCTTCACGGTGACGGTGATGAACAGGAAGGAAAATGCGTATAATACACGAGTGTCGGCCAGTTACTCCAGTAACCTGTTCTACTCCTCTGTTACACCACTGGTCGAGGGGACAGAGGTGAAGTGCACACCAATAAAAGAATCAAATATTCTCATGTGCCAAGTGAGTTATCCAGCCCTCAGGACAGACCAACTGGCAACATTTGTGGTCAATTTTGATTTTAACCTGAATCAGATTAAAAAAGAGGCCAAAGTTGACTTTGAAGCTTTAAGCGACAGCACAGAGGAAACGCCTGCTGATAATAAGATCTCCATCTCCATTCCTGTGCAGTACAACTCTGAGATCATCCTCAGCAGAGAATCAAACATAGACGTTTATTTACTTGAAAAAGACAACAACTTCCTCACCACAGTGCAGAACTACAAGGACATTGGGCCCGATTTTAACTTTAATCTAAAGGTTTCTACAGGAACTGTCCCGGTCAGTCTGGTTTACCTCAATATCTCGCTTCCCAACAACACGAGAGCTGGAAATCCTCTCCTGTACACAAGCAGGATTAAAACATCACCTGCGGACAAAATCCTCTGTAAAGACAACGATCTGATCGACCCTCTGAAGATCAGTGTAAAACCTCATTCAGCCCGATTTACTGAGGAGAGCTTCAGAGGAACAGATGAACTGAACTGCAGGACGGCCTCATGTCGCGCAGTGCAGTGTACGCTAAAGGACCTGGACCAAAAGAGCGATTATTACATCAACGTCACCACAAACATATGGAACGGCACCTTTGTGATGGCTGATTTCCTGTACGTTGTGCTCTCTGTGAGAGCTGACATAGAGACGTCTCAACCAGACCTGCTCTTTATAGAACAGAAACAACTAAAGGTTGAAGTCAAAGTTAGCAAACCTGGAGCTAAAGCAGATGTTCCAGTGGGTGCCATTGTGGGAAGCATCATCGGTGGTCTGCTATTACTGGCTCTAGCTGTCGCAGTGCTTTACAAGCTTGGATTCTTCAAGAGGAAATATCAACCCTTGATGAAGGGTGAGGAAAATGGAGCAGAAGTCCAAGAATTGCAGGAAAACAATGAGGCGTCCGGAGAGATGAGCTGA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-70 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Human ortholog(s) of this gene implicated in several diseases, including Behcet's disease; artery disease (multiple); blood platelet disease (multiple); diabetes mellitus (multiple); and von Willebrand's disease (multiple). Orthologous to human ITGA2 (integrin subunit alpha 2).

Ensembl:

ensembl_id ENSDART00000139466

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005681 lncRNA upstream 112110 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005828 lncRNA upstream 170021 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005680 lncRNA upstream 234914 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 476894 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00003758 lncRNA upstream 622445 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005829 lncRNA downstream 181497 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 705607 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 708476 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005683 lncRNA downstream 708708 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00005684 lncRNA downstream 708753 9649649 ~ 9661896 (+) True XLOC_001935
TCONS_00003780 mRNA upstream 1564 8875195 ~ 8884205 (+) True XLOC_001922
TCONS_00003777 mRNA upstream 27564 8847033 ~ 8858205 (+) True XLOC_001920
TCONS_00003775 mRNA upstream 44731 8730988 ~ 8841038 (+) False XLOC_001918
TCONS_00003776 mRNA upstream 44808 8767541 ~ 8840961 (+) True XLOC_001918
TCONS_00003773 mRNA upstream 187982 8688678 ~ 8697787 (+) False XLOC_001916
TCONS_00003782 mRNA downstream 27307 8968203 ~ 8975980 (+) False XLOC_001924
TCONS_00003783 mRNA downstream 27328 8968224 ~ 8976823 (+) True XLOC_001924
TCONS_00003784 mRNA downstream 151919 9092815 ~ 9097996 (+) True XLOC_001925
TCONS_00003785 mRNA downstream 218383 9159279 ~ 9184667 (+) True XLOC_001927
TCONS_00003786 mRNA downstream 254294 9195190 ~ 9219663 (+) True XLOC_001928
TCONS_00003779 other upstream 5643 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 16874 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003759 other upstream 542464 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1307718 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1675661 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003791 other downstream 405500 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 784878 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 972167 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003821 other downstream 1860809 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 1881859 10822755 ~ 10823448 (+) True XLOC_001951

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_06063226_06079147.mRNA True 3549 mRNA 0.45 28 CI01000304 6063226 ~ 6079147 (-)