RNA id: TU1231306


Basic Information

Item Value
RNA id TU1231306
length 3294
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110537712
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 49167549 ~ 49209751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcacTATAGTGGGGAATGACAGACTTCTCTATTCCACCGAGGAGTCCTATTACAGTATCTTGGAATGAGAGAGTTTTGAGTATGGTGGGTGGGTGCTAAAGACAATGCTACTCATGGCACTGAGCAGAGTACTGGGGCATAAATAAACTGAGAGCAATGGGGACAGCAGAACTGGAAACTTGCAGGAAGTTGGACAGACATGGGAAAGCTAATGACTGTCACTAGAAGGAATGAGGAGAAGAAAATAATGAAATGAAGGACATCTCCTAAACTACCAATGGGACAGAGGTAAAagtgaacactgaaaacaaaGAAGACACCATAGAAAAAATACATTGCTGGTTTGAGTGACAGCCAGGGGGGGCCAATCAGCATCCTCCATAAGCCAACACTCTCCAGCCCACCTGGACATTGATGCATTTTGCCCAATATTAGTGGCATGACTTATTAACAGCACCATCTAATGGTTATTTACTGTTTGAGTTCTCCATTGTACTTTGTATCTATGCTTCTAAGAGTGGATTGTGTTGAGTCGTCTGAGAGATATTTGTTGCACTACACTAGAGGCTCTGATTTAAAGGCATTTTAGATAAGCCTGTTTGGAGTACATAAATCACAGCTACAGTACAATATTGAGCGAGCACTGACTGAAGGTTAAGGATAGAGTAACCTTGTCCCCAGGCTATTGGGAACAGCGCATATAAGCCTGGGATATCAACGAGACTTAAACATCACGAGACTTCCGGGAATGCTTGCGAaatagaccaaacagaccaggccGGAGGTTGGTGTTTGAGAAGAAAATGATTCCTTAGTTGTTCATTTTCTcaaaatctaaaggcacaacctagattcgagccaatgtcttaagtagttgaacatgttactTATCCAACCTTGTGAAATTGACAACTTATATTGAAGGGGTTGCTTTGATTTGACAGCCTGCACATGCAGTTCGGCCCGAGACGACCGTTAGACCTGGGCTGCTGTCCAAAAGACATACTCTCGTCCACTTGCCCTCGTCTTAAGCGCTTGGGGAAATCCCCGTCGCCATCTTGGAGGGTGGTCCAAATgtttagccaagcaagggaaatTTGCAACATAAGCCCGTCAGCTCTCGTTTTAAGTCGgctttgcgagtgtacaattatgcTCACTCCAgggcctgaaactccccataattcaatttgcgACGATTatacatccgctaagaaaagtcagcgaaaacttaaaaacaacatcaatggagaagtcaacatagaattgtaagtaaaaacgaatgcaaataagttacaaattgtgctactaatgcacatgatGGCACAAACACGTCTCATAAaaagtaaatatgtttttgtttggttatcttttggaaattgtagaaataaaacattctccttcagaagttccagctagacatggaatatctacataggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttataattttaaaagtctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactattctgattaaagaagcaatacaacgggccttctttagactagttgagtatctggagcatcagattttgtgggtttgattacagcctcaaaatggccagaaacaaagacctctcttctgaaactcgtcagtctattcttgttctgagaaattaaggctattccatgcaagaaattgccaagaaactgaagatctcatactgtgtactactcccttcacagaacagcgcaaactgtctctaaccagaatagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgaaaaacagacgcctcacaagtgcTCAACcggtagcttcattaaatagtacctgcaaaacaccagtctcaacatcaacagtgaagaggagactctgggatgctggccttctaggcagagttcctctgtccagtgtctgtgatcttttgcccatcttaatattttatttttattggccagtctgagatatggctttttctttgcaactctgccttttGGGTGGAAGTGTCTGGGAACGAGATTAAGGATAGAGAGATCTGAGGCATGTGTGTCTGTTAACGTTTTCTGGCATTGTAAAGTTAGAATAAggtctggtccagggtgttacatGCAGCTTGCTGACAGTGAGCCAGTATAGCCAAGTAACCAACACAAGGCTATTGGTTTGAATCCCAAACTATGCGTCCTGTGCTAGCTATTATGCTGTCAACATGCTTTTGTATATACTCCTTGCTGTTTGGTAAGCCattttaaaacatataggcctaaaaTGTTCCTTTGGACATTGAGGCATGTAAGAGAATTATACTGGATTTTGAGAGAAACcgtatagagtaccacagtatgagtcataatacccacaAAACCTAGCCGTCAAATAGGGAAATGGTTACAATAATTTTTTCCATCATTCATTTTTCCcgtaggggattttagaaacacttataataagggctgtgttttgtgcaggcttaccctggcgtgatgttttgatagaTGTGTAAATCTAGGACAAAGTGACTTAAATCAATATATTTACCAGTTTGACCTCTAgggttatgggtattatgacaccttcATTGTGGGGCTGTATACTACAATATATGCACTGTGTACTTACTGTAGGTTGCAAGGCCTTTTGTATTTGAGATATACTTGAGATGTGCATGAGGAAGAGCACGATTGTCACTCACTGGGTACTATAAAATGTCATACATTTGTGACTTCATTTTGTTTAAAAGAGGTGGGATTATACACGGAGTATACAAAAGATTAAGAACACctgcactttccatgacatagactgaccaggtgaatccaggtgaaggctatgatcccttattgatgtaacttgttaaatccacttcaatctgtgtagatgaaggggaggagacaggttaaagaaggatttttaaacctcgAGACAAttgacacatagattgtgtatgtgtgccactcggatggtgaatgggcaagacaaagcatttaagtgcttttgaacggggtatggtagtaggtgccaagcgtACCGATTTATGTCAAGAACtgaaacgctgctgggtttttcatgctcaacattttgctgtgtgtttcaagaatggtccaccacccaaaggacatccagcaaacttgacacaactgtgggaagcattggagtcgacatgggccagcatccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1231287 lncRNA upstream 42067 49157618 ~ 49162954 (+) True G1081939
TU1231286 lncRNA upstream 48349 49155632 ~ 49156672 (+) True G1081938
TU1231282 lncRNA upstream 54159 49150626 ~ 49150862 (+) True G1081934
TU1231279 lncRNA upstream 55327 49149458 ~ 49149694 (+) True G1081931
TU1230989 lncRNA upstream 106495 49091857 ~ 49098526 (+) True LOC110537710
TU1231403 lncRNA downstream 98710 49308461 ~ 49308954 (+) True G1082036
TU1231406 lncRNA downstream 101585 49311336 ~ 49314771 (+) True G1082039
TU1231576 lncRNA downstream 338725 49548476 ~ 49548705 (+) True G1082209
TU1231590 lncRNA downstream 352242 49561993 ~ 49611570 (+) True G1082220
TU1231619 lncRNA downstream 404374 49614125 ~ 49614519 (+) True G1082247
XM_021623991.2 mRNA upstream 63935 49112328 ~ 49141086 (+) True LOC110537711
XM_021623979.2 mRNA upstream 107438 48990305 ~ 49097583 (+) False LOC110537710
XM_021623994.2 mRNA downstream 52391 49262142 ~ 49298309 (+) False LOC110537713
XM_021623993.2 mRNA downstream 67261 49277012 ~ 49298309 (+) False LOC110537713
XM_021624019.2 mRNA downstream 463336 49673087 ~ 49674977 (+) True tmem126a
XM_021624052.2 mRNA downstream 480872 49690623 ~ 49700093 (+) False ccdc83
XM_021624051.2 mRNA downstream 480874 49690625 ~ 49700093 (+) False ccdc83
TU1230664 other upstream 457522 48746955 ~ 48747499 (+) True G1081353
TU1226400 other upstream 3196412 46004151 ~ 46008609 (+) True G1077322
TU1226456 other upstream 3284760 45900629 ~ 45920261 (+) False nrgna
TU1231372 other downstream 52569 49262320 ~ 49291269 (+) False LOC110537713
TU1231374 other downstream 52569 49262320 ~ 49291251 (+) False LOC110537713
TU1231373 other downstream 67352 49277103 ~ 49291269 (+) False LOC110537713
TU1231375 other downstream 67401 49277152 ~ 49291269 (+) False LOC110537713
TU1231371 other downstream 81654 49291405 ~ 49300347 (+) True LOC110537713

Expression Profile